Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03451 GCAAATGGATAAACATGGCTCGTGGAAGGCACACGCTTGATATTCATTCCTCTCTCACGATTAGATTCAGATTTGAGTTTGAGAGTGTGGCGTGTGGCATGGATCATCCCAAACCCAAACCTCAACTCCTCACTCACACCTCTAACCGGTCTCTCCAGGAAAGAGAGAAAGAGAGGGATCCAAAGGTTCTCAAAGCAGACCGCGAGAAACTCCGAAGGGATCGACTCAACCAACACTTTCTACACTTGGGAATTACGTTAGATCCTGATAGACCAAAGAATGACAAGGCAACCATCCTCACTGAGACCATCCAAATGCTAAAGGACTTAACCGCCGAAGTTAATAGGCTTAAAATGGAGCATAAAGCACTTTCTGAAGAGTCACGCGAAGTAAGACAACAAACCCTGTCTGCTGCTCATTTCTTCTGTCGATTCTACAATTTGCAGCTAATGCAAGAAAAGAATGAACTCAGAGAAGAGAAGACATCTCTAAAATCTGATATAGAAAATCTTAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTATCCATCTTGGTCTGCGATGGACCATTCTGTTGTCATCCGTCCACCTTACTCATATCCAGTTCCTATACCTATTCCTCCTGCCCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCACATTCCTAATCCTTGTTCAATGTGTGTCCAATATTCTACTCCAACTAACCCCCCAGTTGAGGCCCCATCTGCTCTGTATGCTTCCACATCCCACGCGTCGAACCAAAAAGAATCCCGTAGCAAGTCACCGGGTCATAGAAGCTTCAGTGATGCTGAAAGAAGTAGCGAGTCTCATGATGTGGCCACAGATCTTGAACTAAAGATGCCTGGCTTGTCATCAACACAACAGGATTGCACTTCTGGACGAAGGAAGGGCAAGCATTCAACCATCGTAGATGGGAGTGCTTCAAGCCAGTATTCTTCTTCTCAAGGACTTCGAGATAGCTCCAACAGAGTGGGTGACATCCCAAACGATGATAATTGATAGTATATGGATACTTCTACTATTTGATCACATCATACAGGTCATATATGCATACCAGTTTCCAATAGATACTCGTTTCTAGGTGTTAGTATAATTTGGCAATCGATTATATCATTTGTAAAAACAAAATGATGACCTATGGAACAGTTCTTCCCCTGACAACAGGAAAAGCTGCAAGATGTTGCTTAATATAGATGTATAATCCTCCTAAGTTAACTACTACAGCATCTACTACTATATGTAGAAGGTTACAAACTACTCACAATAACCCATCTTCGAGCAATTCGAGTGTTCTTTTAAGTTTTGCTAAGTGG 1369 0.4259 MARGRHTLDIHSSLTIRFRFEFESVACGMDHPKPKPQLLTHTSNRSLQEREKERDPKVLKADREKLRRDRLNQHFLHLGITLDPDRPKNDKATILTETIQMLKDLTAEVNRLKMEHKALSEESREVRQQTLSAAHFFCRFYNLQLMQEKNELREEKTSLKSDIENLNAQYQQRVRIMYPSWSAMDHSVVIRPPYSYPVPIPIPPAPISIHPSLQPFPFFGNQNPGHIPNPCSMCVQYSTPTNPPVEAPSALYASTSHASNQKESRSKSPGHRSFSDAERSSESHDVATDLELKMPGLSSTQQDCTSGRRKGKHSTIVDGSASSQYSSSQGLRDSSNRVGDIPNDDN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03451 346 MobiDBLite consensus disorder prediction 245 263 - -
Pste1g03451 346 CDD bHLH_AtILR3_like 60 153 - -
Pste1g03451 346 MobiDBLite consensus disorder prediction 264 289 - -
Pste1g03451 346 Gene3D - 55 135 IPR036638 GO:0046983
Pste1g03451 346 Pfam Helix-loop-helix DNA-binding domain 60 105 IPR011598 GO:0046983
Pste1g03451 346 Coils Coil 95 129 - -
Pste1g03451 346 SMART finulus 61 111 IPR011598 GO:0046983
Pste1g03451 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 122 IPR036638 GO:0046983
Pste1g03451 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 105 IPR011598 GO:0046983
Pste1g03451 346 Coils Coil 142 169 - -
Pste1g03451 346 MobiDBLite consensus disorder prediction 30 58 - -
Pste1g03451 346 PANTHER TRANSCRIPTION FACTOR BHLH121 144 339 IPR044579 GO:0003700|GO:0006879
Pste1g03451 346 MobiDBLite consensus disorder prediction 316 336 - -
Pste1g03451 346 MobiDBLite consensus disorder prediction 245 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03451 Pste-Chr1 16084688 16087313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03451 60 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 50.820 2.16e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g03451 HLH 8.4e-08 No_clan