Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03440 GAAAAAGGCACCTGAAAATCGAAATTGGAGTGCGAAAAATGGGTTTGGCGGTTAACAATTGCAGTTCAGAAAACAAAGGTTTTGTCGTCAAAATTCAAAATCAAAACTTTGTGCATCTGCAACAGAATAAGGAACGAATCCATGTCACTGCAGGCTTTGAAGGAAACTCTGCGACATTGCTCAACTCAAAAACCCTCTTCTTCAATTACCCAAACACAGCCGAATTCAATTCTTCGCGAAAGCGATTCCCTCTTCCCAATCGCTAGAAAACCCCCCAAATCCTCTCTTTCCGACCAGCTTCGCCGCCTTAACGCATCCCCTCTTGAATCCCACAACACTCTAACCCAAACACATTCCAAAACCCTACAACAAGAAAAAAAAGAAGAAGACAAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCTGAGATAAAGAGAACGAAATTCGCTTCACCAAAATTGCCGCAGTTTCAATTTGATGACACTGGACCCTATGAGCCTCTTCATTTGTCTTCACCTGGAGAATTTCCCGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTGGAGCATCAAAGAGAGGGAGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATACTTGGGGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCCATCTTTGGTAAAGAAGGACATTCCACTCTAAATGAAAAGACAGAGAAAAGAGACCATGCATTGATAATTTGCCCAACTTCTGTTATTCACAACTGGGAGAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGAGCAAACCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCCTTGTCAGATGTCAAATGGAACGCTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTTAGACGCTATGGTCTCACTGGGACTGTAATGCAAAATAAGATCATGGAGTTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTCTACGATGAACCCCTTAAGCATGGCCAGAGGTCAACAGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAATACCTTGTGACAATTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATCGTGTTTTGTGCTATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTAGCTGTGGTAGCCCTCTTACTCAAGTTGAGTGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGTCTTGTACTTCCATGTCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGTTGATCAAGCCAAACCCCAAAGATGACCCTGACAAACAAACTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATGGATTTAGTGGGTGGGAACACACAAAATGAAAGTTTCATGGGTCTCAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAACTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGTTACTGCTTCTCAAGACTTGATGGGTCAACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTTAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCCCAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTTGTGGTGTTCCGTCTTCTTGCAGCTGCTTCACTTGAAGAAATTGTATACTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATAGAAAAACGATATTTTGAAGGTGTACAGGACTGCAAGGAATTTCAAGGAGAGCTTTTTGGGATTTCCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAAATCGTTGAATTGCATAAAGAGCATGGACATGAAACAGAGCAACTGGAAAAAGTAAATCTGTCAGAAGAAACAGGCTCATCAGTATTGGAGTCAGAAACCAGATTATCCTATAGTAAATCTGCGGCGGCTACAACAAGTAAACCAGATTTTGAAGACCTTGGCATTGTATATACCCATCGCAATGAAGACATTGTCAACTTCGGACCAGGGATTCCAGTGAAATTGAATACCAGCATCCCCTTGGATGATAGTCCAGTCAAGCCAAGCATCTCTTTGGACCACCAAAGAAAAATACCAGATTGTGTACCTAAAGAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAAACCAATATAGGCTCCTTGGTCAGTTTATGGGCATGGGAGAGCTTGTTTTTAGCAAATGGTTACTATCAACGACTCCACTGGAGAGAGAAAAAATGCTTCTTGACTACAAAAAGAAAAAGAAGATGCCTAATGGTTGAAAGGTGGTTCTTATGGATGACAGAATGTCTTCCATGTATCATCACCAAAACATTTATTATGTAAAATTTTGTACAGTATAGTCTGGTATTTCCTTTTCACAAATTGATCTGTTATTTTTTGTCAGTAATTGTTTTATTAAATTTAGCTTGTGTAGCTGCGTTGCAAACTTTGTAACAAAAAGTTTGATGAATCTTAATGTTACTTCAAGCCGGCATGATGAAATAATTATTTAATACAAAAATGGTA 3022 0.4017 MSLQALKETLRHCSTQKPSSSITQTQPNSILRESDSLFPIARKPPKSSLSDQLRRLNASPLESHNTLTQTHSKTLQQEKKEEDKEEEEEEEEEPEIKRTKFASPKLPQFQFDDTGPYEPLHLSSPGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKEGHSTLNEKTEKRDHALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSSLSDVKWNAVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQYLVTILHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQTKDAEFAAAVFGPDMDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAASLEEIVYSRQVYKQQLSNIAVSGKIEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIVELHKEHGHETEQLEKVNLSEETGSSVLESETRLSYSKSAAATTSKPDFEDLGIVYTHRNEDIVNFGPGIPVKLNTSIPLDDSPVKPSISLDHQRKIPDCVPKEQKVPLIDERKRNQYRLLGQFMGMGELVFSKWLLSTTPLEREKMLLDYKKKKKMPNG 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03440 877 SMART ultradead3 137 331 IPR014001 -
Pste1g03440 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 373 IPR027417 -
Pste1g03440 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 682 IPR001650 -
Pste1g03440 877 Pfam Helicase conserved C-terminal domain 529 641 IPR001650 -
Pste1g03440 877 Pfam SNF2-related domain 157 413 IPR000330 GO:0005524|GO:0140658
Pste1g03440 877 PANTHER SNF2/RAD54 FAMILY MEMBER 24 813 - -
Pste1g03440 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 700 IPR027417 -
Pste1g03440 877 CDD SF2_C_SNF 523 652 - -
Pste1g03440 877 MobiDBLite consensus disorder prediction 50 73 - -
Pste1g03440 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 323 IPR014001 -
Pste1g03440 877 SMART helicmild6 558 641 IPR001650 -
Pste1g03440 877 MobiDBLite consensus disorder prediction 1 33 - -
Pste1g03440 877 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 121 372 - -
Pste1g03440 877 MobiDBLite consensus disorder prediction 1 107 - -
Pste1g03440 877 Gene3D - 385 741 IPR027417 -
Pste1g03440 877 Coils Coil 72 93 - -
Pste1g03440 877 Gene3D - 121 372 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03440 Pste-Chr1 16024770 16031018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03440 160 675 RAD5 or RAD16-like Gene Family AT5G05130 25.662 5.76e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste1g03440 SNF2_N 2.2e-54 CL0023