Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03422 AATCGAAGAAACAAATCCGAAAAGAAAAAAACTGGAAATATGGGCTTGAAAAGTATATGTTGTATCATTGAAGTGACTTTCACAGTAGTTTTTATTACAAGCCGATTTGTCTTATCTGATAATGTTTCAATTCCTGCTGACAAGGGAAAAGTAGAAGAATGGTTTAAAACTAACGTTGGTCCTTTAGATAAAAGAAAAAGCAGTTTGGACCCTGCATTAGTGACGGCTGAAGCCTCTCCTAAGGTTATAAAAGTAATGAAAGATGGTAGTGGAGAATTTAAAACTATCACGGATGCCCTTAAAAGCATACCTTCTGGGAACACCAAGCGTACAATTTTGTACATTGGAGCTGGAACTTATGAAGAGAAAATCAAAGTTGATGCGTCAAAGCCTTTCGTCACCCTTTATGGAGCACCAGGAAATATGCCAAACTTGACCTTTGGGGGCACTGCAGCACAATATGGCACTGTCGATAGTGCTACATTAATTGTTGAATCTAATTATTTTGTGGCAGCTAACATCAACATCGCGCGAGACCAGATGGGAAAAACAGGAGCCCAAGCAGTAGCGTTACGAATTTCTGGTGACAAAGCAGCATTTTATAATTGCAAAATGTATGGATTCCAAGACACAGATTGCTTAATTCAAGGCACCGTGGATTATATTTTCGGAAGTGGGAAGTCACTATATTTGAAAACTGAGCTAAGAACAATTGCTGAATCCTGGACTACATTTATAACAGCACAAGCAAGAAAAGGTGATGATGAGGACGATGGCTACTCATTTGTACATTGTGACGTTACTGGAAGTGCAAAGGGAACTTTCTTGGGGAGAGCATGGTTTTCTCATCCCAGAGTGGTCTTCGCTTATAGCACCATGAGTGACATGGTGGATAAAAAAGGCTGGAGTAATAACAATCACCCAGAACATGACAAAACTGCATTTTTTGGAGAGTTTAAAAACCAAGGACCAGGTGCAGATCCCCAAGGGCGTGCTCCTATTACTAGGCAGCTTACTGAAGAAACAGTTAAACCTTTCATAAGCCTAGAGATGATTGAGGGTTCCAAATGGTTACTTCCTCCTCCAACTGTATAACTAGCTTTCATGTCTTATAATATATTGTGTTAAACATGTAATATTTTGCTTCAAATTAAACTTAGGTCAGTGTAAACTTAGATTAGTTGATACACAAGTGGTATATCTGTTAGGCGTCCATGCTCATTATCATGATCGACAACCTTGGTACAATTGATTAGAATCTTGGGATTGTTGTTACTTTAAAATTTTGTGATGAC 1295 0.3861 NRRNKSEKKKTGNMGLKSICCIIEVTFTVVFITSRFVLSDNVSIPADKGKVEEWFKTNVGPLDKRKSSLDPALVTAEASPKVIKVMKDGSGEFKTITDALKSIPSGNTKRTILYIGAGTYEEKIKVDASKPFVTLYGAPGNMPNLTFGGTAAQYGTVDSATLIVESNYFVAANINIARDQMGKTGAQAVALRISGDKAAFYNCKMYGFQDTDCLIQGTVDYIFGSGKSLYLKTELRTIAESWTTFITAQARKGDDEDDGYSFVHCDVTGSAKGTFLGRAWFSHPRVVFAYSTMSDMVDKKGWSNNNHPEHDKTAFFGEFKNQGPGADPQGRAPITRQLTEETVKPFISLEMIEGSKWLLPPPTV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03422 364 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Pste1g03422 364 Pfam Pectinesterase 83 354 IPR000070 GO:0030599|GO:0042545
Pste1g03422 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 75 358 - -
Pste1g03422 364 Gene3D - 77 360 IPR012334 -
Pste1g03422 364 SUPERFAMILY Pectin lyase-like 77 359 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03422 Pste-Chr1 15900798 15902521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03422 14 364 Carbohydrate Esterase AT1G69940 50.546 2.07e-127 368