Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03418 AATCGAAGAAACAAATCCAAAAAGAAAAAAACTGAAAATATGGGCTTGAAAAGCATATGTTGTATCATTGAAGTGACGACTTTCACAGTAGTTTTTATTACAAGCCGATTTGTCTTATCTGATAATGTGCCAATTCCCGCTGACAAGGGAAAAGTAGAAGAATGGTTTAAAACTAACGTTGGTTCTTTAGATGAAAGAAAAAGCAGTTTGGACCCTGCATTAGTGACGGCTGAAGCCTCTCCTAAGGTTATAAAAGTAATGAAAGATGGTAGTGGAGAATTTAAAACTATCACGGATGCCCTTAAAAGCATACCTTCTGGGAACACCAAGCGTACAATTTTGTACATTGGAGCTGGAACTTATGAAGAGAAAATCAAAGTTGATGCGTCAAAGCCTTTCGTCACCCTTTATGGAGCACCAGGAAATATGCCAAACTTGACCTTTGGGGGCACTGCAGCACAATATGGCACTGTCGATAGTGCTACATTAATTGTTGAATCTAATTATTTTGTGGCAGCTAACATCAACATCGCGAACACTGCAGCGAGACCAGATGGGAAAAAAACAGGAGCCCAAGCAGTAGCGTTACGAATTTCTGGTGACAAAGCAGCATTTTATAATTGCAAAATGCATAGACATTTTTTCAAAGATTGCTTAATTCAAGGCACCGTGGATTATATTTTCGGAAGTGGAAAGTCACTATATTTGAAAACTGAGCTAAGAACAATTGCTGAATCCTGGACTACATTTATAACCGCACAAGCAAGAAAAGGTGATAATGAGGACGATGGCTACTCATTTGTACATTGTGACGTTACTGGAAGTGCAAAGGGCACTTTCTTGGGCAGAGCATGGTTTTCTCATCCCAGAGTGGTCTTCGCTTATAGCACCATGAGTGACATGGTGGATAAAAAAGGCTGGAGTAATAACAATCACCCAGAACATGACAAAACTGCATTTTTTGGAGAGTTTAAAAACCAAGGACCGGGTGCAGATCCCCAAGGGCGTGCTCCTATTACTAGGCAGCTTACTGAAGAAACAGTTAAACCTTTTATAAGCCTAGAGATGATTGAGGGTTCCAAATGGTTACTTCCTCCTCCAACTGTATAACTAGCTTTCATGTCTTATAATATATTGTGTTAAACATGTAATATTTTGCTTCAAATTTAGTTTCAAATTAAAGTGAGGTCAGTGTAAACTTAGATTAGTTGATACACAAGTGGTGTATCCGTTTAGGCGTCCATGCACACTATCGTGATCGACAACCTTGGTACAATTGACTAGAATCTTGGGATTGTTGTTACTTTAAACTTTTGTGATGAC 1323 0.3893 NRRNKSKKKKTENMGLKSICCIIEVTTFTVVFITSRFVLSDNVPIPADKGKVEEWFKTNVGSLDERKSSLDPALVTAEASPKVIKVMKDGSGEFKTITDALKSIPSGNTKRTILYIGAGTYEEKIKVDASKPFVTLYGAPGNMPNLTFGGTAAQYGTVDSATLIVESNYFVAANINIANTAARPDGKKTGAQAVALRISGDKAAFYNCKMHRHFFKDCLIQGTVDYIFGSGKSLYLKTELRTIAESWTTFITAQARKGDNEDDGYSFVHCDVTGSAKGTFLGRAWFSHPRVVFAYSTMSDMVDKKGWSNNNHPEHDKTAFFGEFKNQGPGADPQGRAPITRQLTEETVKPFISLEMIEGSKWLLPPPTV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03418 369 Pfam Pectinesterase 84 359 IPR000070 GO:0030599|GO:0042545
Pste1g03418 369 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Pste1g03418 369 SUPERFAMILY Pectin lyase-like 78 364 IPR011050 -
Pste1g03418 369 Gene3D - 78 365 IPR012334 -
Pste1g03418 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03418 Pste-Chr1 15863950 15865690 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03418 14 369 Carbohydrate Esterase AT1G69940 50.409 2.37e-132 381