Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03405 ATGGGCCCATGGTTTGAAGAGCATTTGATGCACCCACTTGCTCTTCTTCCGTCTTCGTTCTGTCTCTGCTCTCTACCCTTCAACTTCAACGCAGCTTTTCTTCCTCTGCTTCCAATATTCTCAATCATTCTTGCACCCTCCAAACACAAACTCCTTCACTTCTCTTCTCTTCTCATCTGTTCCGGTACCTGTAAAACTAAAAGGAAAATGGCTTTAAATCACTTGGAGGAGACTATGCCTGCAAAAGAAAACTGGAAATCTTCCAGTGAAGTCATTGCTGATTCTGATAGAAATGCCTCTGGTGGCTTTGACTGCAACATCTGTCTGGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTTTCAGAGTACCTCTGTGGATAATGATGAGGAACAGAAACCACAATGTCCTGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGCCGTGGCCAAACAACAATTCCTTCTAAAGGGAAGTCACATCTAGTAGAGACTGTCATACCACAAAGACCTCATGGTCCCAGATCATTGAATTCTAGAAGTGTTTCCCAACCTATTTATCAAAGTTATCATCCCTATAGTAATCCTTATCATGCTCAACAACTCAGCTCAATCCCAAGCGGTTATACCTCACCAATGCTTAGAACAAGTGGTTCACTAGACAATTCATTTGGAATATTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCAGGTGACAAACATGCATACATATACAAATTCATACAATCTTTCAGGGACCAGTAACCCAAGGATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAGTAGAATAAGTTGTTTCCTCCTATGCTGCCTAGTTTTGTGTCTTCTCTTATTCTGACTCTTATTACTTTTTCATCTTTAGTTATGGTACTTCCTTGCATAGAATACAATAGCTCATTGATCCAGATGTATCCTATGTTAGAGAAGCTGCAAATTAATGCTGAGTTATGTGTAATTATCAATCTCTCTACGAGCTATATGAAATGAAAATGATTAGTTTATGT 1093 0.3952 MGPWFEEHLMHPLALLPSSFCLCSLPFNFNAAFLPLLPIFSIILAPSKHKLLHFSSLLICSGTCKTKRKMALNHLEETMPAKENWKSSSEVIADSDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSVDNDEEQKPQCPVCKSEVSQSSLVPLYGRGQTTIPSKGKSHLVETVIPQRPHGPRSLNSRSVSQPIYQSYHPYSNPYHAQQLSSIPSGYTSPMLRTSGSLDNSFGIFGEMIYARVFGNQVTNMHTYTNSYNLSGTSNPRMRRHLMQVDKSLSRISCFLLCCLVLCLLLF 308
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03405 308 SMART ring_2 105 153 IPR001841 -
Pste1g03405 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 167 IPR013083 -
Pste1g03405 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 78 305 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste1g03405 308 SUPERFAMILY RING/U-box 102 166 - -
Pste1g03405 308 ProSiteProfiles Zinc finger RING-type profile. 105 154 IPR001841 -
Pste1g03405 308 FunFam E3 ubiquitin-protein ligase RMA1H1 75 174 - -
Pste1g03405 308 Pfam RING-type zinc-finger 105 151 IPR027370 -
Pste1g03405 308 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste1g03405 Pste-Chr1 15719612 15723521 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03405 90 308 C3H Transcription Factor Family AT4G28270 39.912 6.78e-45 149