Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03390 GAAACCCAAAACCTCCTTTAACGGTCTAAACCCACTCACTCACTCTGCCGCAACATATTGTCGGTAGCGCCCAAAACGCCGCTGTTTCACTCTAACCGAGGCCGCACGCCACCCATTTTGGCCTCCGCACACAATGCACCTCCACCGTGTCTCCGCCGCCTCCAAACTCAGCCTCACGTGCTTCAGCTTCGCCTTGAAACTCGTTCTGCTGTACGCCGCCGAGGGGCAACCTCAGCACCGCGGCCCCGACCTACATTGGTACCCCGGAACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGTACGTTGGTGGATGTGAAGCCGTTCAGGGCGAGGGTGGGTGCGGTGGGACCCTTGCTGTTCATGAACGGAGAAGGGTGTGGTGCATGCTACAAGGTTAAGTGTTTGGACAAGAGTATCTGTTCCAGAAGAGCAGTGACTGTGATAATTACGGATGAATGCCCTGGTTGCCCCTCTGACCAAACCCACTTCGATCTCAGTGGTGCCGCGTTTGGCCGCATGGCTATTGCTGGCGAGAACGGTCCACTCAGGGACCGTGGTCAAATCCCTGTCATTTACCGAAGAACACCGTGCAAGTATCCGGGAAGAAAAATTGCCTTTCATGTTAACGAAGGCTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAGGGAGATATTAGCTCCATGCATATAAGAGAAGCAGGGTCTACGGAGTGGCTGCAGATGAATCATCTTTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGAGGACCATTCTCAGTGAAATTGAGCTCTTCCACTGGGAGGAGCCTCTCTGCAAGAGATGTTATTCCCACCAATTGGGTTCCGAAGGCCACTTACACCTCTCTTGCTTACAAGGACCAAGTGTGGAAGAAAGCCACTGCAACTTATGCCAATGACTCAGAGGGATCTCTTATTACCGAAGGAGCTTGTGGTTATGGAGACCTCCACAAGGCTAGTTATGGGAAGCACAGTGCTGGGTTAAGCTCCATTTTGTTCGATAGAGGGAGCACATGTGGGGCTTGTTATGAAATCAGGTGTGTGGACCACATCTTGTGGTGTGTGATGGGAAGCCCTTCTGTAGTTGTTACTGTTACAGATTTCTGTGCTCCAAATTATGGACTTTCAGTTGATTATGGTGGCTGGTGTAATTTTCCAAGAGAACATTTTGAGTTGTCTCTAGCTGCATTTGCTGAAATTGCCAAGAAAAAAGCTGATATAGTGCCAATTCAGTACAGAAGAGTGAAGTGTGAAAGAAGTGGTGGTCTGAGATTCACAATGAGTGGGAGTTCTCACTTCTATCAAGTCCTGATTTCCAATGTTGCTCTGGATGGTGAAGTGTTTGCTGTGAAAGTGAAAGGATCTAGAACAGGATGGATACCGATGGCAAGGAACTGGGGACAAAACTGGCATTGCAATTGCAACTTCCAAAAACAGCCTTTATCCTTTGAGGTAACCATCAGTAGTGGAAAAACAATCACATCTTACAATGTAGCACCCGCAAACTGGATGCTTGGACAAACATTTGAGGGAAAACAGTTTCAGGATGAGTAGGTTCAGAACTTTAAGTAGGATAAGTTTTGGGGAGGCTTGAATTTTGAACTTTATCTATAATTGTAAACTATGACTAGTGAAATCAGTTGTCACAGAGCACAAGCTTAATTGTATATATATTTGCTCATGATTCATGATAAAAAATTGGTACAAGTCTGTGGTGAAAAATAATCAGGGGAAAAAGGTTGAGCTAAGGGTTATCCAAGATCCCTATCCTAAAGATTCGGTAGATCAAAAGGTACTCATTGACGGAATATGTAATTATTTGAAAAGTAATGTCGGTATAAGTAGTCATATGAAGAACTCAATTTCTTTTCTTTCTTGTGATTCCTTTAAATTGTAGTCATTCTCAGAACAAGAAAC 1987 0.4645 MHLHRVSAASKLSLTCFSFALKLVLLYAAEGQPQHRGPDLHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPFRARVGAVGPLLFMNGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDISSMHIREAGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSTGRSLSARDVIPTNWVPKATYTSLAYKDQVWKKATATYANDSEGSLITEGACGYGDLHKASYGKHSAGLSSILFDRGSTCGACYEIRCVDHILWCVMGSPSVVVTVTDFCAPNYGLSVDYGGWCNFPREHFELSLAAFAEIAKKKADIVPIQYRRVKCERSGGLRFTMSGSSHFYQVLISNVALDGEVFAVKVKGSRTGWIPMARNWGQNWHCNCNFQKQPLSFEVTISSGKTITSYNVAPANWMLGQTFEGKQFQDE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03390 496 Gene3D - 401 493 IPR036749 -
Pste1g03390 496 SUPERFAMILY PHL pollen allergen 398 490 IPR036749 -
Pste1g03390 496 FunFam Expansin B3 28 164 - -
Pste1g03390 496 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 411 490 IPR007117 -
Pste1g03390 496 SUPERFAMILY Barwin-like endoglucanases 41 167 IPR036908 -
Pste1g03390 496 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Pste1g03390 496 PRINTS Expansin signature 376 389 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 412 433 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 359 376 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 326 337 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 299 313 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 340 350 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 400 412 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 476 492 IPR002963 GO:0009664
Pste1g03390 496 PRINTS Expansin signature 447 468 IPR002963 GO:0009664
Pste1g03390 496 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Pste1g03390 496 PANTHER EXPANSIN-A15 266 493 IPR002963 GO:0009664
Pste1g03390 496 SMART dpbb_1 304 391 IPR007112 -
Pste1g03390 496 SMART dpbb_1 78 158 IPR007112 -
Pste1g03390 496 Gene3D - 258 397 IPR036908 -
Pste1g03390 496 Gene3D - 29 163 IPR036908 -
Pste1g03390 496 CDD DPBB_EXPB_N 42 163 - -
Pste1g03390 496 PRINTS Expansin/Lol pI family signature 438 452 IPR007118 GO:0005576
Pste1g03390 496 PRINTS Expansin/Lol pI family signature 476 490 IPR007118 GO:0005576
Pste1g03390 496 PRINTS Expansin/Lol pI family signature 308 326 IPR007118 GO:0005576
Pste1g03390 496 PRINTS Expansin/Lol pI family signature 286 304 IPR007118 GO:0005576
Pste1g03390 496 PRINTS Expansin/Lol pI family signature 268 283 IPR007118 GO:0005576
Pste1g03390 496 PRINTS Expansin/Lol pI family signature 384 400 IPR007118 GO:0005576
Pste1g03390 496 Pfam Lytic transglycolase 305 391 IPR009009 -
Pste1g03390 496 Pfam Lytic transglycolase 83 157 IPR009009 -
Pste1g03390 496 SUPERFAMILY Barwin-like endoglucanases 264 419 IPR036908 -
Pste1g03390 496 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 287 401 IPR007112 -
Pste1g03390 496 CDD DPBB_EXPA_N 269 396 - -
Pste1g03390 496 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Pste1g03390 496 Pfam Expansin C-terminal domain 403 479 IPR007117 -
Pste1g03390 496 Pfam Expansin C-terminal domain 170 250 IPR007117 -
Pste1g03390 496 Gene3D - 164 257 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03390 Pste-Chr1 15633963 15644569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03390 263 494 Expansin Gene Family AT4G38210 65.812 2.19e-110 326