LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03384	ATGGATGAGTGTCATACTAGCCAACTAGGTAGCAACTTCTGTCATTGGGATGTAGTTTCAGGTCTTGTTCATTTGCACGAACTAGGCATAATACATCGGGATTTGAAACCTCAAAATGTTTTGATAATAAAAGAAAGATCTTTATGTGCAAAGCTTTCTGATATGGGAATTAGCAAACGCCTTCTTGAAGATATGTCTTCTCTGAGTCACAGTGTTACGGGTTGTGGCAGTTCTGGCTGGCAAGCACCAGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGCAGGAAGACATCCATTTGGAGAACGTCTGGAACGTGATGTCAATATTGTAAAAGATCAAAAGGATCTTTTCTTAGTGGAGTTTATGCCTGAAGCTGAGGATCTTATCTATTCTTTGTTAAACCATAATCCTGATCTTAGGCCAATGGCGATTGAAGTATTGCACCATCCTCTTTTCTGGAGCTCTGAGATGAGACTTTCATTTCTTCGTGATGTAAGTGACAGGGTGGAACTTGAAGATAGAGAAACTGATTCTGATCTTTTGAAGGCATTAGAAAGGGTTGCTCCACTATCTGTAGGTTCAAGATGGGATGAGAAGCTAAATCCTGAGTTCATCACTAACATAGGTCGTTACCGGAGATATAAATTTGACAGTGTTCGAGACTTGTTGAGAGTCATGAGAAATAAGCTAAATCATTACAGGGAATTGCCCCAAGAAATACAGGAACTGATAGGACCTGTTCCACAAGGATTCAATGACTATTTTGCAAGTCGGTTTCCAAGGCTCTTGATTGAAGTCTACAAAGTCATATGCAAAAATTGCAAGGACGATGAATGTTTTCAAAGATATTTTAGATACATTAACTAGTTCCTTGACCTTGCTTGGATGACTTGGGAATTTACAACTTAGAATGGTGGCAGTATGTAGCAGAATGTGTTGACATTTACAGAATGGAGCGATAGAACTGTAATGTAATATATGTACATATGTTGACATTTACCACAGATTAACTAACCCAAAGTTACAAAGGAACACCATCTGTATTGTCTAGTGTTTAGAGGATTCAGCTAAATGTACATTAATGTATTTTACAAGGCTTTGGGGAGTGTGGGAGGGGATTCTTGAACGCATACTTCTTTTACTTTGACCCTCAGTCATATGGAATTATGTACTGGAAAAACTTCAAGATGTATCTCAATTTCTCATACATTGCAGACCTAATTACGGAGGTCATATACAAAAAGGAATTGGAATCTGGCAGTGTTAGTCAGTTCATGTAAACC	1331	0.3854	MDECHTSQLGSNFCHWDVVSGLVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLEDMSSLSHSVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKDQKDLFLVEFMPEAEDLIYSLLNHNPDLRPMAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETDSDLLKALERVAPLSVGSRWDEKLNPEFITNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELIGPVPQGFNDYFASRFPRLLIEVYKVICKNCKDDECFQRYFRYIN	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03384	304	CDD	RNase_Ire1	172	300	-	-
	Pste1g03384	304	Gene3D	Transferase(Phosphotransferase) domain 1	11	170	-	-
	Pste1g03384	304	ProSiteProfiles	KEN domain profile.	171	302	IPR010513	GO:0004540\|GO:0006397
	Pste1g03384	304	SMART	PGNneu	233	287	-	-
	Pste1g03384	304	SUPERFAMILY	Protein kinase-like (PK-like)	15	194	IPR011009	-
	Pste1g03384	304	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1	172	304	-	-
	Pste1g03384	304	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	30	42	IPR008271	GO:0004672\|GO:0006468
	Pste1g03384	304	Gene3D	KEN domain	171	303	IPR038357	-
	Pste1g03384	304	Pfam	Protein kinase domain	13	168	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03384	304	PANTHER	IRE1-RELATED	17	301	IPR045133	GO:0004521\|GO:0004674\|GO:0030968
	Pste1g03384	304	Pfam	Ribonuclease 2-5A	174	300	IPR010513	GO:0004540\|GO:0006397
	Pste1g03384	304	ProSiteProfiles	Protein kinase domain profile.	1	168	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03384	304	SMART	serkin_6	1	168	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03384	304	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1a	7	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03384	Pste-Chr1	15608138	15614132	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03384	21	238	MAP Kinase Kinase Kinase	AT1G54960	26.577	4.05e-18	82.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Pste1g03384		Pkinase	2e-29	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g03384	1	15608138	15614132	Pste1g03384	1	15608138	15614132	ECH
	Pste1g03384	1	15608138	15614132	Pste7g01991	7	18183952	18193270	PCT