Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03383 AAGGAGAACAACATTCATATTTGGCCTGCACCATCATTTTTTATGGACCATATCTCTCGAGACCAACCTTAGCATTAGCCTTTTTGCCCTCTCATTTTTCTCCACTTTTCTTTAGTGCCCGGATTCTCCATTTTCCACTCTGCTTTTTATGCTCTCTCTTTGCTTCACGCTTCCTGTGCTACTATTGGCCACTCGTTAAAGTTTGTCTTTTTGGTACTATGTATAGATACTACCTCCTTCTTGTGTAAATCTACCAGGTTCCTCATCCAACCATGATTAATGTTTGGCTCTCGGTTTTAATGGTTCTCTCCAACGGGTTCTTTTCGAATGGGGCTGGCAGCGAGCATAATTCCTCAATACCAGATTTTGTAAATATTGGGGCTCTCTTCTCTTTAAACACCAGTGTTGGTAGAAGTGTAGTAATTGCTATACAAGCTGCTGTTGAAGATGTAAATTCTGATCCAACTATTCTTGGTCAAACCAAGCTGAACCTCTCACTGCAAGAAGATTCTAAGTATAGAGGTTTCCTGAGCATTTCTGAGGTTTTGCAGGTCATGGCAAGACAGACGGTGGCAATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTCTCAGCTTTGGACCCTACTCTTTCTTCACTTCAATTTCCATTCTTCATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACATTATTGATTACTTTAACTGGAAAGATGTTATTGCTGTCTACCTTGATGATGATAATGGGAGAAATGGAATTGGCGCATTAGGCGATAAGCTTGCTGAGAGGCGTTGCAGAATATCATTTAAAGCACCTTTGAGCCCCGAAGCATCTATGGAAGAAATTACCAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCCGCAACTCAATTTGGCCCCAAGGTGTTTAGAGTTGCAAAGAATCTTGGGATGATGGGAGCTGGGTATGTCTGGATAGCTACTGCTTTCCTCTCTGCTCTGCTTGATATCAACAATCCCCTCTCTTCAGATTCCATGGATGATATTCAAGGAGTTCTTACACCGCGGATGTACACTCCAGATTCACAGCTCAAAAGGAGGTTTGTTTCTAAATGGAAAAACTTGACTAGTGGGGATGCTGCTAAGGCCAACCTTGGATTGAGTTTTTTACCTCTCTATGCATATGACACTGTTTATGTGCTTGCTCATGCACTGGATGCTTTTTTCAAACAAGGTAACCAAATTACATTCTCACCTGATTCAAAGCTATCTAGCATACATGGAGACAGCTTGAATCTTGAAGCCTTGAAAATCTTCAATGAAGGAAATTTATTACGTAGTAAGATCTATGAGGTTAACATGACTGGTGTATCAGGTCGATTCAAGTATACATCTGATAGAAACCTTGTTAATCCTACATATGAAATCATTAATGTGGTTGGAACAGGAACTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCACTTGATCCTCCAGAAACTCCTTATTCCAAATCAGCCAATCTTTCCAGGGAAACAAGAAAGTTGTACCCTGTGATTTGGCCTGGAAACACAGATGACAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAAAGGTGTTAGTTACAGTGAATTTGTCTCGCAAAAAAAAAGCACTGATATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAACCTGTTGTCTTATGCTGTCCCCTATAAGTTCATCCCATATGGAGATGGTAAGAGCAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACGACGGGAGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTTGTAGTCGCACCAGTTAGGAAGGCAGAATCCAATGCTTTGGCCTTTTTGGACCCTTTTACACCAAAGATGTGGTGTGTCACAGCTATCTTTTTCATATTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACTATTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGTGTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACAGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTATTCGCCCATTAAAGGCATTGAAAGTTTAGTAACTGGCAAAGAGCCTATTGGATACACGCAGGGTTCTTTTGCTAGAAATTATTTAGTTGACGAAATTGGTATTCACGAGTCCAGGCTTGTTCCTCTAACAACACCAGAAGAAGCTGCTAAAGCACTCAGAAATGGTCCAGAACATGGGGGTGTTGCTGCTTACATTGATGAGCGAGCCTACACTGACATTTTCCTCTCCAGCCGTTGTGATTTAACTGTTGTAGGTCAAGAGTTCACCCGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCAGTGGACCTGTCAACTGCCATATTGCAAATGGTAGATAATGGAGATTTACAAAGGATCCATGACAAATGGCTTCTGAGTAGTGCTTGCTTATCACAAGGTGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTACGCGATCTGTGGGCTTGCCTGCTTGCTTGCACTCTTCATATATCTTATACAGATTTGGAGGCAATACCACAAGCACTACTCAGAGGAAGTTGATCCCCCTGACGGCGAAGGCTTAGGATCATCAAAATCTTCACGTCTTAAGACTTTCCTTACATTTGCTGATGAAAAAGAAGAGACTGTTAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAGGCAGTGAAGGAAGCTCATCCATGAACTCCAATGGCAATAGGGGATATGCTTCGCGCAGAAGTGAATATGCTAATGAAGTATGACCAATATTTCTACATGCTACTAGCTACATCAGGAGTGCTCTTAATCCCTACTGCAATTAGTGGGCTACTAGTACTTCCTTTTTTCTTCAAGTAAATATATGTCGGATGAATTAGAACTTTTGTAGCTAAATGTAACACTTATTTTAACAGTCTTCATAAAAAAGAAGAAAAGTTTTGATTCATTTTACGTATGTAAACTCATTTTCAATTCACTTGCTGATTACAATCTCGATAACAGTGTTGTTTATTTTGTCTTGTATGGACAATGGATTATAAAGTAACATCGATTTATGTTTGACTGACT 3402 0.4059 MINVWLSVLMVLSNGFFSNGAGSEHNSSIPDFVNIGALFSLNTSVGRSVVIAIQAAVEDVNSDPTILGQTKLNLSLQEDSKYRGFLSISEVLQVMARQTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADIIDYFNWKDVIAVYLDDDNGRNGIGALGDKLAERRCRISFKAPLSPEASMEEITNVLVQVALAESRVIVVHAATQFGPKVFRVAKNLGMMGAGYVWIATAFLSALLDINNPLSSDSMDDIQGVLTPRMYTPDSQLKRRFVSKWKNLTSGDAAKANLGLSFLPLYAYDTVYVLAHALDAFFKQGNQITFSPDSKLSSIHGDSLNLEALKIFNEGNLLRSKIYEVNMTGVSGRFKYTSDRNLVNPTYEIINVVGTGTRRIGYWSNYSGLSLDPPETPYSKSANLSRETRKLYPVIWPGNTDDRPRGWVFPNNGRLLKIGVPKGVSYSEFVSQKKSTDMFEGFCIDVFLAAVNLLSYAVPYKFIPYGDGKSNPSMTELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYIESGLVVVAPVRKAESNALAFLDPFTPKMWCVTAIFFILVGAVVWILEHRVNDEFRGPPKKQVVTILWFSFSTMFFSHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVTGKEPIGYTQGSFARNYLVDEIGIHESRLVPLTTPEEAAKALRNGPEHGGVAAYIDERAYTDIFLSSRCDLTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMVDNGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYAICGLACLLALFIYLIQIWRQYHKHYSEEVDPPDGEGLGSSKSSRLKTFLTFADEKEETVKSRSKRRKMERISYRGSEGSSSMNSNGNRGYASRRSEYANEV 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03383 941 Pfam Bacterial extracellular solute-binding proteins, family 3 490 813 IPR001638 -
Pste1g03383 941 FunFam Glutamate receptor 584 714 - -
Pste1g03383 941 Gene3D - 760 820 - -
Pste1g03383 941 Coils Coil 938 941 - -
Pste1g03383 941 Gene3D - 584 708 - -
Pste1g03383 941 FunFam Glutamate receptor 468 584 - -
Pste1g03383 941 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Pste1g03383 941 Gene3D - 51 401 - -
Pste1g03383 941 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 893 IPR015683 -
Pste1g03383 941 Gene3D - 149 426 - -
Pste1g03383 941 SUPERFAMILY Periplasmic binding protein-like I 28 465 IPR028082 -
Pste1g03383 941 Gene3D - 480 583 - -
Pste1g03383 941 Pfam Receptor family ligand binding region 51 411 IPR001828 -
Pste1g03383 941 PIRSF IGluLR_plant 1 940 IPR017103 -
Pste1g03383 941 CDD GluR_Plant 473 813 - -
Pste1g03383 941 MobiDBLite consensus disorder prediction 894 941 - -
Pste1g03383 941 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Pste1g03383 941 FunFam Glutamate receptor 149 305 - -
Pste1g03383 941 SUPERFAMILY Periplasmic binding protein-like II 451 815 - -
Pste1g03383 941 FunFam Glutamate receptor 710 817 - -
Pste1g03383 941 CDD PBP1_GABAb_receptor_plant 34 427 IPR044440 -
Pste1g03383 941 MobiDBLite consensus disorder prediction 914 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03383 Pste-Chr1 15602788 15607107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03383 5 916 Ion Channels AT3G51480 57.174 0.0 1095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03383 1 15602788 15607107 Pste1g03383 1 15602788 15607107 ECH
Pste7g01976 7 18022827 18026787 Pste1g03383 1 15602788 15607107 ECH
Pste1g03383 1 15602788 15607107 Pste7g01976 7 18022827 18026787 PCT