Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03373 AGAAGACCCACATTCACAGCTAACACATGAAGAAAGAAAAGAGAAAACGCTGAGAAAAAAGTGGAGGCATAAGGAATTGCATCTCGCAAAGGCCACACACACCGCAAATATAATAACAACACTTCATCCTCTTAAACAAAGACTTCGCGTCCAAGCAATTTCTTACTCATTAAAAAACAAAACAAAACAAATATATCAAAAACCAAAATCATCTTTTTTCTTTGGTGAATCTGAATAGAGCAGAGGGTGATGTCGTGTTCGCCGTCATCGGGATCGGAGGAAGACGATGAGGGATTCGATTCTTACCGGAAAGGAGGCTACCACGCTGTCAGAGTCGCCGATCAGTTCGCCGCCGGCAGGTACATAGCGCAGAGGAAGTTGGGTTGGGGGGAGTTTTCCACCGTCTGGCTCGCTTACGATACTAAAACTTCGTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAATTTGTTCAGGCTGCCCTTCATGAGATCGATGTTCTTTCATCGATTGCTGACTCTGATCCGCCAAATTCAAAATTTGTTATTCAATTAATTGACCACTTTAAGCACACAGGTCCAAATGGGCAGCATCTTTGCATGGTCCTTGAGTTTCTTGGCGATAGCTTGCTTCGCTTGATCAGATATAACCGTTATAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCAAATGCATTTTGATTGGTTTGGATTACTTGCATACTGATCTTGGTATAATCCATACTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGATCCGAAGTCTCCCCAATACTAGAGCGGCCTGAGGGAAACACAAATTGTGGAGTCACGAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCTAGGACAGCAGTTGCTAAGATATCTGGAAGAAGAACGTCAACGGGAGGAATAGGAGATGTTGCAAAGGCAGGTAGAAATCTTGACGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAAACGAGGCAGTACAGAGCACCTGAAGTTATATTGAAGGCTGGCTATTCCTGCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTTGCCACTGGAGATATGCTGTTTACACCCAAGGGTGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCAGATGATGGAGCTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGAATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGCTGACTGATAAATATAAATTTTCAGTGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTCTTTGATTTTGCACCGGAAAAGCGACCCACAGCAGGGCAGTGCCTGCAACACCCATGGCTGAACTGGGATGAGCAGCAGTCTTAAAATCGTGGTGGGAAAGTGAATGGGTGAAATGTGTTTTGATACGGTCAAAGCATAAGTCACATCTTTAATCCTTTCACAAGAACCACTAATGATTGTGATTTTTTTTTTTTTGTTGTTGTAAAACTTTAATAAGATTCTTTCTATTGGATTATTAATTAACTACAAAGATGTAAATCAGAAAAGAATTTTGTTCCTCTAGAGATATCTGACAGCCGAATTTGCGTGTATATTGTTCTCATGCTGTAACTTGTAAGTCATGACATGACATTCATTCAAGATTATGTTTTCCTTTTTCCCCATTGAAGTCAGGACTCATCATATAAAACACAGGATACTAGAAATGAACTTAATGATTCTAACGTGAGACAAACAACTG 1888 0.4089 MSCSPSSGSEEDDEGFDSYRKGGYHAVRVADQFAAGRYIAQRKLGWGEFSTVWLAYDTKTSSYVALKIQKSAAQFVQAALHEIDVLSSIADSDPPNSKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCILIGLDYLHTDLGIIHTDLKPENILLCSTIDPAKDPLRSEVSPILERPEGNTNCGVTSLIEKRLKRRARTAVAKISGRRTSTGGIGDVAKAGRNLDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKAGYSCSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLAQMMELLGKMPRKIAIGGAQSKDFFDRHGDLKRIRRLKFCPLDKLLTDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTAGQCLQHPWLNWDEQQS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03373 420 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Pste1g03373 420 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Pste1g03373 420 CDD STKc_SRPK 27 413 - -
Pste1g03373 420 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03373 420 SUPERFAMILY Protein kinase-like (PK-like) 32 414 IPR011009 -
Pste1g03373 420 FunFam Protein kinase superfamily protein 24 123 - -
Pste1g03373 420 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Pste1g03373 420 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03373 420 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Pste1g03373 420 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 9 205 - -
Pste1g03373 420 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03373 420 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03373 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03373 Pste-Chr1 15551460 15556314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03373 4 414 EF-hand Containing Proteins AT5G22840 50.972 1.00e-166 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Pste1g03373 Pkinase 9.3e-22 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03373 1 15551460 15556314 Pste1g03373 1 15551460 15556314 ECH
Pste1g03373 1 15551460 15556314 Pste7g01960 7 17879600 17884811 PCT