Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03343 GTGACCCATGTTATCTACTTCTACTTCTCTCTTTTTGGATCCTCAACCCAAGCACCCATTAATTCTTGTTTAGCTATTCATTCTTCACAATCACTTTTTGTTGTTAACGCTAAATCCTAAACATGGGCCTTTGCTTTGCTTCCCTTGCTCGCCACCAAACATGTACACCACTCTCTAATAACGCTCCTCACTATTCAGGTTCAGCGATTGAAAGCAGTAGCAATGGCAAGAGCGTAGTGGAAACACGAAACTTGAAGGAGTTCAATTTTGCGGATCTGAAAGCAGCGACCAGGAGTTTCAGGTCAGATGCATTGCTTGGTGAGGGAGGTTTTGGCAAAGTGTACAAAGGATGGGTGCATGAGAGAACACTGACACCCACCAAAGCTGGATCTGGAATGGTGGTCGCTGTTAAGAAATTGAATCCAGAAAGTTTGCAGGGTCTTCACGAGTGGCAGTCAGAAATAAATTTTTTAGGAAGGATATCTCACCCAAATCTGGTCAAGCTATTGGGTTACTGTTGTGACGATGTGGAATTTCTCCTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTATTCAGAAGAAATACTACCAGAGAACCACTGTCTTGGGACACCCGAATCAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTTCTTGCATACTTCTGAAAAGAAAATCATTTACAGAGATTTCAAAGCCTCCAATATACTACTTGATGAGGAGTACAATGCTAAAATTTCAGATTTTGGGTTGGCGAAATTAGGGCCTTCTGGGGAAGATACACATGTTAGTACCAGGATCATGGGCACATATGGCTATGCTGCCCCTGAATACATTGCAACAGGCCATTTGTATGTCAAAAGTGATGTTTATGGTTTCGGTGTGGTGCTGCTGGAAATGCTAACAGGATTAAGGGCACTTGATAGAAACCGTCCCTTAGAACAGCAGAACCTAGTTGAATGGGCCAAGCCCTCTCTCTCTGATAAAATCAAGTTAAAAAGTATTATGGATGAGAGGATAGAGGGTCAGTATTCAACCAAAGCAGCACTGAAAGCAGCAAGTCTTACCCTAAAATGCCTTGAACATGATCTTAAGAAACGTCCTCCTATGAAAGATGTTGTGGAGACATTGGAACATATTGAAGCTATCAAGGTTAGAAGGAAGTGATCCAGAAAACAATAATAGCCAATTATGAGCATCCTTCTTAGTAGCACTTAATTAATTAATGTCGGGTAATGCCTGAAGCGTACGTGGACAACTAGAATTTTGGTTGAATATGATAAAGATGTTGTACCAACATGTGTACTTAGCATACTAGGTTTACAATTAGTATAGCTAGGTAGCTACTAGGCCTGTTAATTAACTCTTTAGTGTATTGTTGCTGTACTCCTCGAGTAGGTTTTTACCTCTTTCACATTCTTGCATATATAGTTCCCTAGCTAGTCTGTAAGTTTATGTAGTTTTTACAATTGTATTATCATTTTTTACTTGTACTCCTCTCTCGTAAAATATCCTATATGAGACAACTTAGGTGGGTGATCGATCTGGATTCCATTGTTAAAGG 1578 0.4068 MGLCFASLARHQTCTPLSNNAPHYSGSAIESSSNGKSVVETRNLKEFNFADLKAATRSFRSDALLGEGGFGKVYKGWVHERTLTPTKAGSGMVVAVKKLNPESLQGLHEWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTTREPLSWDTRIKIAIGAARGLAFLHTSEKKIIYRDFKASNILLDEEYNAKISDFGLAKLGPSGEDTHVSTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDRNRPLEQQNLVEWAKPSLSDKIKLKSIMDERIEGQYSTKAALKAASLTLKCLEHDLKKRPPMKDVVETLEHIEAIKVRRK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03343 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Pste1g03343 352 PANTHER OS01G0588500 PROTEIN-RELATED 34 345 - -
Pste1g03343 352 ProSiteProfiles Protein kinase domain profile. 59 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03343 352 ProSitePatterns Protein kinases ATP-binding region signature. 65 98 IPR017441 GO:0005524
Pste1g03343 352 Gene3D Transferase(Phosphotransferase) domain 1 145 351 - -
Pste1g03343 352 SUPERFAMILY Protein kinase-like (PK-like) 33 341 IPR011009 -
Pste1g03343 352 Gene3D Phosphorylase Kinase; domain 1 23 144 - -
Pste1g03343 352 CDD STKc_IRAK 65 344 - -
Pste1g03343 352 FunFam Serine/threonine-protein kinase PBS1 145 352 - -
Pste1g03343 352 Pfam Protein tyrosine and serine/threonine kinase 63 341 IPR001245 GO:0004672|GO:0006468
Pste1g03343 352 FunFam Serine/threonine-protein kinase BIK1 26 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03343 Pste-Chr1 15375856 15379602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03343 7 341 Glycoside Hydrolase AT3G07070 46.628 1.04e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pste1g03343 PK_Tyr_Ser-Thr 9.1e-48 CL0016