Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03335 CAACATGTACAGCAAATAACACTTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCTCACCTAAACCTTTTCTCTTCTCCGCTCATCTATCGTTCAACGCCTCACTCGCTGCACCTTCTCTCTTCTTTCTCACACTTCAAATTCTCATACCCAAAACTTTTCTTCTCTTTATTTTATTATTTAATAATAGTAACAATAATTTGATTCCAAAACTTTCAATTATGCAACGCCCTCTCTCTTTCTCTCTCTAGAGAGCTCGCCCTGCCATGTCATCCACCGAGCCGCCGGAGGCCCAAGCGCCGCTGCTCCGCTCCCGCCACGACGCCGCCCGACCACCTGCGCTCGCGCTCCTCTTAGGCCGCGCCACCGGCCGCCGCGGCCCCTCCATGCTCGTGCGCGAGACGGCGGCGCGTGAGCTCGAGGAGCGCCGCGCCGACTGGGGCTACTCCAAACCCGTGGTGGCGCTCGACATGTCCTGGAACATGGCCTTCGTCGTCGTCTCGGCGGCGATGCTCGCCTGCACCACCGCCGAGCACCCCAACACGCCGATCCGAATCTGGATCATCGGCTACGCCCTGCAGTGCCTCGTCCACGTGGCGCTTGTGTGGCTCGAGTACCGCCGCCGGAGCCGGGGCCAGAGGCCGCTCGACGTGGAGAGCGACGCTGCCAGCGACGATGCTGCCAACGACAGCGACGACGGTGATGGGACCACCCCTGCCAACTCTTCTCGCTCCGGATTCACTAAACGATGTGAATCATTAAATACCGGGGTTTCATTCCTTTGGTGGATACTGGGCTTTTACTGGGTTGTTTCTGGTGGTGATATACTTCTACAAGATGCCCCACGATTGTACTGGTTGGCTGTTGTCTTTCTTGCATTTGATGTTTTTTTTGCTATATTTTGTGTGGTCTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCCGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATGCTTCCGAAATACAGATTTCGATTATCAAGCAATGAGGATAAGTCTAGTAGTGGTGGAGCTGGGTCGATGGTTCCCATAGAAACCAGCAGTGCTTACTTGGCAAATGAACGAACACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATACGAGGATGGAGCAGAGCTCCATGCTCTTCCCTGTAACCATCATTTTCACTCGTCATGCATAGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGTAACGAACAAGTGTGACAGAAAAGTGAAGAACCAACTGGGTTTTCAACAGCTGTTGTGTAATATGTGTATATAGTTTCAAGACAAGAAGCACTTTACCTCCCAACTCGCTGAGTTTTGATCGTTATTTCGTTTAGCTGTCTTTGTAGAGAAAACATATAGAGCATTTATTTATTAATAAGTTAGCAACTCTAGTCAACCTAGCATTATTTCGTCCTTTGTTTCTCTCGAAAGTTGTCCAATTTATGAATTGTTTATTATTTTTCTGACGAAAACTATATTGTTGCTTCATTAATCATAGGTTTTAGTCATTTTGATTGTGTTAAATCAGTCTCTTCGTTTCCCTAAAATCAGTTGTACGTATCTTGTTAATTTATGGACTGTTATGAATTAAACC 1703 0.4768 MSSTEPPEAQAPLLRSRHDAARPPALALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTTAEHPNTPIRIWIIGYALQCLVHVALVWLEYRRRSRGQRPLDVESDAASDDAANDSDDGDGTTPANSSRSGFTKRCESLNTGVSFLWWILGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRLSSNEDKSSSGGAGSMVPIETSSAYLANERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03335 348 MobiDBLite consensus disorder prediction 128 158 - -
Pste1g03335 348 Pfam Ring finger domain 296 338 IPR001841 -
Pste1g03335 348 SMART ring_2 297 337 IPR001841 -
Pste1g03335 348 FunFam E3 ubiquitin protein ligase RIE1 277 345 - -
Pste1g03335 348 CDD RING-H2_PA-TM-RING 296 338 - -
Pste1g03335 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 343 IPR013083 -
Pste1g03335 348 PANTHER TARGET OF ERK KINASE MPK-1 33 346 - -
Pste1g03335 348 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Pste1g03335 348 SUPERFAMILY RING/U-box 285 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03335 Pste-Chr1 15320116 15325508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03335 1 347 C3H Transcription Factor Family AT1G68070 69.516 8.44e-179 497