Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03324 AGGGTCCCTCTTTTTCTCTCGGTTCTCTCTCTCCATTTTAATTTTTGTTTATTATTATAAGCCCAACAACACTCGCCCCTATTCTTGTTTTTCTTAATTAATTTTTTGTCACGATTTCACTGTTATCTCTCAATTCCCTGTGTTTCAACTTCGTTCCAAATCCTATTTGGCTTCAATCGTTCTAGGGTTAGGGTTCCATCCCCTTTCTCTTTTGATTCAATTGTCAACGACCGCCCGGGACCTGATTCCCCTCCGGTGGTGCTTTGGACGGAGGACGCTATGGGAGGTGACACAGCCGCCACTGAGAGTGCCTCGGAGTCGAACACTGTCGCCGGAGTCCATATCAATATTCGTTGTTCCAATGGTTCTAAATTTTCTGTTCAGATTAGTCTCGATTCCACCGTCAGATCCTTCAAGGATGCTGTCGCAACCAACTGCGATATCCCCGCTGATCAACAGCGCCTGATTTACAAGGGTCGGATCCTTAAGGATGATCAAACCCTCAAAAGTTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTTCTAACACCAGTGGTGGCACTAATAGTGGTGGTGCCAATACCACAACAGCAAACACAAGAGGTGCTGGTACTAATGAGGGTGGGGGTTTAGGAGGGCAGGGATTTGGAGCTTCATTGTTTCCTGGTCTTGGTGGTAACAATGGGATGGGCGGTGGTGGCCTCAATGGCTTATTTGGAGCAGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAGTGAGAGATATAATGAATACACCTGCTATGCAGAATTTAATAAATAATCCAGAGATAGTACGGAACCTTATAATGAATAACCCTCAGATGCAAGAGCTAATGGATAGAAACCCGGAGCTGGCACACATACTCAATGATCCTAGTACTCTCCGTCAGACACTTGAGGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACTGACAGAGCAATGAGTAACATTGAATCTTCTCCTGAGGGATTCAATATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAACACAGGAAATGATGGTGCAGCAGTCAGGAACCAATCAGCTAACCCCCCAACAACTAATTCTGAAGCAACATCCCCAGTACCCAATACGAACCCACTTCCTAATCCTTGGTCCTCTACTGGAACTGCAGGTGCCCAAAATAACACCAGAAGGTCAACTACTACTGGTGGGGATGTTCGACAGCAGGCACCCACTGGCTTAGGAGGGCTTGGACTGCCAGATTTGGAAGGCATGCTGGGTGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAACCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACAATGAATCAGATTCTTGGGGTCAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTAAGAGAAGTGATGCAAAATCCAGAGTTTCTACGTCTGTTTTCCTCACCTGAAACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTACTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGCTTCTTCTTCGGCCAACTTCATCTCCGCCGAGCTGTGTTTTGACAAGGCAAGGCGCGTTCAGTCTTCACAGCAGCGAACAACTCTTCATGGTCCGATGAACAACTTGGGGCTGGAGATGTTGTCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCTACATCGGGGAACGTTCATGCAGCAGTTGAACGGCTTTTAGGGAACTCCGGA 1929 0.464 MGGDTAATESASESNTVAGVHINIRCSNGSKFSVQISLDSTVRSFKDAVATNCDIPADQQRLIYKGRILKDDQTLKSYGLEADHTVHLVRGFAPSNTSGGTNSGGANTTTANTRGAGTNEGGGLGGQGFGASLFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDGAAVRNQSANPPTTNSEATSPVPNTNPLPNPWSSTGTAGAQNNTRRSTTTGGDVRQQAPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTASSSANFISAELCFDKARRVQSSQQRTTLHGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEMGFFDTQENIRALIATSGNVHAAVERLLGNSG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03324 550 SMART ubq_7 20 91 IPR000626 GO:0005515
Pste1g03324 550 Gene3D - 194 252 - -
Pste1g03324 550 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Pste1g03324 550 SUPERFAMILY UBA-like 517 547 IPR009060 GO:0005515
Pste1g03324 550 SMART CBM 350 392 IPR006636 -
Pste1g03324 550 SMART CBM 395 430 IPR006636 -
Pste1g03324 550 SMART CBM 145 186 IPR006636 -
Pste1g03324 550 SMART CBM 199 238 IPR006636 -
Pste1g03324 550 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Pste1g03324 550 MobiDBLite consensus disorder prediction 274 350 - -
Pste1g03324 550 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Pste1g03324 550 CDD Ubl_Dsk2p_like 20 92 - -
Pste1g03324 550 Pfam UBA/TS-N domain 518 545 IPR015940 -
Pste1g03324 550 PANTHER UBIQUILIN 15 546 IPR015496 -
Pste1g03324 550 SUPERFAMILY Ubiquitin-like 19 106 IPR029071 -
Pste1g03324 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 518 548 IPR015940 -
Pste1g03324 550 MobiDBLite consensus disorder prediction 274 339 - -
Pste1g03324 550 Gene3D - 7 104 - -
Pste1g03324 550 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Pste1g03324 550 Gene3D - 517 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03324 Pste-Chr1 15240885 15247371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03324 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 5.13e-08 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03324 1 15240885 15247371 Pste1g03324 1 15240885 15247371 ECH
Pste1g03324 1 15240885 15247371 Pste7g01905 7 17421826 17424170 PCT