LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03252	ATGACTGCCCCGAGGGCGTTGAGGGTAGCTCATCCCAACAACACATTGTATGATGAGGGAGCGTTGATCACCAGGTACCGCTGTACGATTGTCTTGTTCCTCAGAGCCAAAGGTGGTGCGGAGATGGTAAGAACTCCATTCTTTGACAAAAATGGACTGAAGAAAGGTGCATGGAGTAGCGAAGAAGATGAGAGGTTAAGAGCCTATGTTCAGCGATATGGTCATTCTAATTGGCGTCAACTTCCCAAGTTTTCAGGTTTAGCAAGGTGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGGCCAAATCTAAAACACGGAAACTACACCCGAGACGAAGAAGAGATAATCGTCAAATTACAACAAGAATTTGGAAATAAGTTCTTGATCCATGGTTCCATACATGTTCCCGATCTTGAGATACAAGTTCCAAAAAAAAAATGGTCCTTGATCGCTGAAAACCTGCCTGGAAGATCGGACAATGAGGTAAAAAACTATTGGCATAGTCACCTGAAAAAGAGGTTAAAGAGCAATGAAATCAAAAGACCTGAGTTGAAGTCCAAGCCACGTGATGAAGGAAATTTAAATGAAACTCATCAAGTTGATGAAAAATTTGAAAGCCTTGATGCCAATGTTTGTGATGAGGACTTCCTCCCTTATATTTTAGAAAGCTCATTGGCCACGTCCACAGAAACATCGGAAGGAGATAGCCATTCCCCTACATCTAATGTTGAACTATCAACCATGGATAGCTCTTTGTCAAAAGAAGATAGTGTTAACGTTCCTCAACTGCGATCATACCAAGAATTTAGCAGCGATTTTTTGACTCAACCATTCCTCATAGAAGACACATTTACACAAGATATATGCAGTGGTGAAGGCATAGCCTTATTATTTCCAGACTTCAATGATGATACATATTTTTTGTAGAGAACTGCTATAGAGATTCAGATTGGTATAATAATGTCATATTACAAAGTATTACACATGAGAAAGACCACTTACCACACGATTAATAATAAGCGGATCGATTTTG	1042	0.3983	MTAPRALRVAHPNNTLYDEGALITRYRCTIVLFLRAKGGAEMVRTPFFDKNGLKKGAWSSEEDERLRAYVQRYGHSNWRQLPKFSGLARCGKSCRLRWLNYLRPNLKHGNYTRDEEEIIVKLQQEFGNKFLIHGSIHVPDLEIQVPKKKWSLIAENLPGRSDNEVKNYWHSHLKKRLKSNEIKRPELKSKPRDEGNLNETHQVDEKFESLDANVCDEDFLPYILESSLATSTETSEGDSHSPTSNVELSTMDSSLSKEDSVNVPQLRSYQEFSSDFLTQPFLIEDTFTQDICSGEGIALLFPDFNDDTYFL	311

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03252	311	CDD	SANT	110	173	IPR001005	-
	Pste1g03252	311	Gene3D	-	54	107	-	-
	Pste1g03252	311	ProSiteProfiles	Myb-like domain profile.	50	102	IPR001005	-
	Pste1g03252	311	FunFam	Transcription factor RAX3	48	108	-	-
	Pste1g03252	311	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	50	106	IPR017930	-
	Pste1g03252	311	SUPERFAMILY	Homeodomain-like	52	169	IPR009057	-
	Pste1g03252	311	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	42	253	-	-
	Pste1g03252	311	MobiDBLite	consensus disorder prediction	230	259	-	-
	Pste1g03252	311	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	147	177	IPR017930	-
	Pste1g03252	311	Pfam	Myb-like DNA-binding domain	109	173	IPR001005	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03252	Pste-Chr1	14834274	14839454	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03252	42	177	MYB Transcription Factor Family	AT5G16770	52.206	7.03e-47	159

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste1g03252		Myb_DNA-binding	2.1e-09	CL0123

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