Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03252 ATGACTGCCCCGAGGGCGTTGAGGGTAGCTCATCCCAACAACACATTGTATGATGAGGGAGCGTTGATCACCAGGTACCGCTGTACGATTGTCTTGTTCCTCAGAGCCAAAGGTGGTGCGGAGATGGTAAGAACTCCATTCTTTGACAAAAATGGACTGAAGAAAGGTGCATGGAGTAGCGAAGAAGATGAGAGGTTAAGAGCCTATGTTCAGCGATATGGTCATTCTAATTGGCGTCAACTTCCCAAGTTTTCAGGTTTAGCAAGGTGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGGCCAAATCTAAAACACGGAAACTACACCCGAGACGAAGAAGAGATAATCGTCAAATTACAACAAGAATTTGGAAATAAGTTCTTGATCCATGGTTCCATACATGTTCCCGATCTTGAGATACAAGTTCCAAAAAAAAAATGGTCCTTGATCGCTGAAAACCTGCCTGGAAGATCGGACAATGAGGTAAAAAACTATTGGCATAGTCACCTGAAAAAGAGGTTAAAGAGCAATGAAATCAAAAGACCTGAGTTGAAGTCCAAGCCACGTGATGAAGGAAATTTAAATGAAACTCATCAAGTTGATGAAAAATTTGAAAGCCTTGATGCCAATGTTTGTGATGAGGACTTCCTCCCTTATATTTTAGAAAGCTCATTGGCCACGTCCACAGAAACATCGGAAGGAGATAGCCATTCCCCTACATCTAATGTTGAACTATCAACCATGGATAGCTCTTTGTCAAAAGAAGATAGTGTTAACGTTCCTCAACTGCGATCATACCAAGAATTTAGCAGCGATTTTTTGACTCAACCATTCCTCATAGAAGACACATTTACACAAGATATATGCAGTGGTGAAGGCATAGCCTTATTATTTCCAGACTTCAATGATGATACATATTTTTTGTAGAGAACTGCTATAGAGATTCAGATTGGTATAATAATGTCATATTACAAAGTATTACACATGAGAAAGACCACTTACCACACGATTAATAATAAGCGGATCGATTTTG 1042 0.3983 MTAPRALRVAHPNNTLYDEGALITRYRCTIVLFLRAKGGAEMVRTPFFDKNGLKKGAWSSEEDERLRAYVQRYGHSNWRQLPKFSGLARCGKSCRLRWLNYLRPNLKHGNYTRDEEEIIVKLQQEFGNKFLIHGSIHVPDLEIQVPKKKWSLIAENLPGRSDNEVKNYWHSHLKKRLKSNEIKRPELKSKPRDEGNLNETHQVDEKFESLDANVCDEDFLPYILESSLATSTETSEGDSHSPTSNVELSTMDSSLSKEDSVNVPQLRSYQEFSSDFLTQPFLIEDTFTQDICSGEGIALLFPDFNDDTYFL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03252 311 CDD SANT 110 173 IPR001005 -
Pste1g03252 311 Gene3D - 54 107 - -
Pste1g03252 311 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Pste1g03252 311 FunFam Transcription factor RAX3 48 108 - -
Pste1g03252 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 106 IPR017930 -
Pste1g03252 311 SUPERFAMILY Homeodomain-like 52 169 IPR009057 -
Pste1g03252 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 253 - -
Pste1g03252 311 MobiDBLite consensus disorder prediction 230 259 - -
Pste1g03252 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 177 IPR017930 -
Pste1g03252 311 Pfam Myb-like DNA-binding domain 109 173 IPR001005 -
Pste1g03252 311 Pfam Myb-like DNA-binding domain 55 102 IPR001005 -
Pste1g03252 311 Gene3D - 110 202 - -
Pste1g03252 311 ProSiteProfiles Myb-like domain profile. 103 173 IPR001005 -
Pste1g03252 311 MobiDBLite consensus disorder prediction 180 202 - -
Pste1g03252 311 SMART sant 54 104 IPR001005 -
Pste1g03252 311 SMART sant 107 175 IPR001005 -
Pste1g03252 311 CDD SANT 57 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03252 Pste-Chr1 14834274 14839454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03252 42 177 MYB Transcription Factor Family AT5G16770 52.206 7.03e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g03252 Myb_DNA-binding 2.1e-09 CL0123