Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03236 AGGAAATCAAACTTTAGATTATAGCCTCTAGTTACACATAGTGTGATAACTTTCTGGATATATACCACACACACGATTACTCAAAAAAGAAAGTGGTAATAATTAACAGAATCTTATTGTTCTTGTAAAGATCCATGATGGTGAGAACCCCGAGCTGTGACAAAGATGGACTTAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGATTACATTACCAGGTATGGCCACTGGAATTGGCGACTACTCCCCAAGTTTGCAGGTCTTGCAAGATGTGGAAAGAGTTGCAGACTTAGATGGTTGAATTACCTTAGGCCAAACCTTAAAAGAGGGAACTACACCAAAGAAGAAGAGGAAACTATTATCAAGCTGCATCGACATCTTGGTAACAGATGGTCTGCCATAGCTGCACGGATGCCAGGAAGAACAGACAATGAAATTAAAAACCATTGGCACACGAACCTGAAGAAAAGGTCTGAACCAAATGATCAATCCCCAACTGAACCAATTATAAATACTCTTCGAACCATTGATAATACTCCTCAAGATTGTTCCCCATTAATTTCCCAACATTCTTCTTCCTTCACAAGCACAGAGAGTTGCAGTAGTAATGCTGTCACCAGCAACCAAAATCTTGTTCTGGAAAATGAATTTGCCTTTTGGGATGCCGACACGGATCTTATTAGTCAAAACTTCGGGTTAGAACCCTACATGCTTGATATTTCTTATGTTCCCGAACTCGACTACTTTAGCCAAATCTTTCATGCACAACTTTGGAGCCATGATACTTGATATCCGTATTTAGAGAACCAAACACCCAGTTTTCTTCTATACTTTTCCTTTCTCTTATTATATCATTTATTAGACGAGAATGACTATAAAAATAAGTATACGAC 904 0.3872 MMVRTPSCDKDGLKKGTWTPEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTKEEEETIIKLHRHLGNRWSAIAARMPGRTDNEIKNHWHTNLKKRSEPNDQSPTEPIINTLRTIDNTPQDCSPLISQHSSSFTSTESCSSNAVTSNQNLVLENEFAFWDADTDLISQNFGLEPYMLDISYVPELDYFSQIFHAQLWSHDT 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03236 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 165 - -
Pste1g03236 221 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pste1g03236 221 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pste1g03236 221 Gene3D - 14 67 - -
Pste1g03236 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pste1g03236 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste1g03236 221 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pste1g03236 221 Gene3D - 70 128 - -
Pste1g03236 221 SMART sant 14 64 IPR001005 -
Pste1g03236 221 SMART sant 67 115 IPR001005 -
Pste1g03236 221 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pste1g03236 221 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste1g03236 221 CDD SANT 70 113 IPR001005 -
Pste1g03236 221 FunFam MYB-related transcription factor 14 67 - -
Pste1g03236 221 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03236 Pste-Chr1 14738790 14741814 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03236 2 120 MYB Transcription Factor Family AT2G31180 70.588 4.89e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g03236 Myb_DNA-binding 8.4e-14 CL0123