Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03221 GCCGATTCTCCTCAGAGAAGGTATTTAACCTTATGCTAGTTTTGCCCTGGGCTTTTGATTTGGGGTTTGATCTCCTCACCCTCGGTTCGAATCTGGGGATGATCACTGGAGATCCGCCAAGAATTCCTGAATTCTGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAATCAAGGTCAAGGTCTAGATCTAGGCCTAGGTCTAGGTCCCGATCAAGATCTTTTGAAAAACAGAGGCCGAGATCCCGTTCCAGAAGTCATGACAGGTCAAGATCAAGAAGTAATGAAAGGTCTGAGTCTAGAAATTCTGGGAATACACTTTATGTGACTGGTCTATCTTCGAGGGTCACTCAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCTCGGACTCGAATTTCTCGTGGTTTTGCTTTTATTACAATGGATAATGTTGAGGATGCGAATCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGAGACCAAGAACTCCGACACCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACCATGGATATCGTGGGGACCGGGGAAGGTACCGAGGAGGTGGATCTGGTCGTGATGATTATGCATATCGTGGAGACCGTGGAAAGTCTCCTCCAAGGCGCTCACCGTATCGAGGTGGTAGAGATTATTCACCGAGGCACTCACCACCTTATGGTGGAAGATCTAGGAGGGATAGGTCGAGGTCACTTCCTTATTCTCCGTATGGTAGCCCAGATATGAGATATGCTCGTGGATCT 839 0.4744 MLVLPWAFDLGFDLLTLGSNLGMITGDPPRIPEFWNSRSPSPWRAQSRSRSRSRPRSRSRSRSFEKQRPRSRSRSHDRSRSRSNERSESRNSGNTLYVTGLSSRVTQRDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDNVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDHGYRGDRGRYRGGGSGRDDYAYRGDRGKSPPRRSPYRGGRDYSPRHSPPYGGRSRRDRSRSLPYSPYGSPDMRYARGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03221 269 SMART rrm1_1 95 168 IPR000504 GO:0003723
Pste1g03221 269 MobiDBLite consensus disorder prediction 58 87 - -
Pste1g03221 269 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 87 251 - -
Pste1g03221 269 MobiDBLite consensus disorder prediction 30 100 - -
Pste1g03221 269 CDD RRM_SF 96 168 - -
Pste1g03221 269 Gene3D - 38 179 IPR012677 -
Pste1g03221 269 MobiDBLite consensus disorder prediction 169 269 - -
Pste1g03221 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Pste1g03221 269 MobiDBLite consensus disorder prediction 188 231 - -
Pste1g03221 269 SUPERFAMILY RNA-binding domain, RBD 88 204 IPR035979 GO:0003676
Pste1g03221 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 165 IPR000504 GO:0003723
Pste1g03221 269 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 29 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03221 Pste-Chr1 14658455 14660955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03221 67 176 Eukaryotic Initiation Factors Gene Family AT1G49760 28.182 6.38e-09 54.7