Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03211 ACCGGAGAGAGAAAATATAAAAAGAAAAATAAGCAGAGCGAGAAAAAAAAAAAGAATAAAACGCCAACCCCAAGCTTCGAAAACGATCGTGAGAGAGATGAAGAAGTGCGAACTGTGCAAGGTTCCGGCGAGGATTTTCTGCGAGTCGGACCAGGCAAGCTTGTGCTGGGACTGCGACGCTAAGGTTCACGGCGCTAATTTCCTCGTTGCCAGGCACTCGCGAACCCTCCTCTGCCGCACGTGTCTATCTCCCACGCCGTGGAAGGCCTCCGGCGCCAGACTCACTGATGCCGCCTCCATCTGCCACCGCTGCACCGCCGCGGAACAACCTGAAGAAAGCGAAGCCGAAAATGACGAGGAACCAGACACCGAGGAGGATGTAGACGAGGTCGGCGACGATGAGGACGGCGACAACCAGGTGGTGCCGTGGTCCTCCACGACCCCGCCGCCTCCTCCGGCGAGCTCATCCGGCAGCGAATGTCTGGAGTTCAGCGGGTGCAAAAACGACGACAACGAATATGCTTCCGTCTCCGCTTCGGAACATGAAACGACAACATCCTTGTTGAAACGACAGCGCGAGAATGACGATGATGGTTCCGATCGTGATCCCCAGTCAGAAGGGTTGCGCGTCTCAACGAAGGTGGCGTGTGACGGAGAATGGTCATTGAAGGAGAAAGTGTGCCTTACGACGTCGTTTCGTGATGGGAAAATTTTCTCTTTCCCTTTTAAGGCTGTGAGATATGGTGGAGCGGATCTGCGTGTCAATGTGTCATGTTCTACCACCTCACAACCAAGTGAACTGTGGAAACCAATTGAAGAATAACGCAAGATTGAGATTTTTGTGAGGAGTTCACAAAAAAGGTTCTATTGTTAGAAGCACCAATAGACAAGGAAGGAGGCATAACGATTTCGCGTTGTGCTTCTTCTTGGAGAATAAGGGAGAAAACATTTCTGATTGAAGGTAAAGGGTCAGAGAGAAGAATTTGACAGCAAATTTGGGAGAAAGAATCATTCAAGCCCATCAAGAAGGAC 1032 0.5087 MKKCELCKVPARIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCLSPTPWKASGARLTDAASICHRCTAAEQPEESEAENDEEPDTEEDVDEVGDDEDGDNQVVPWSSTTPPPPPASSSGSECLEFSGCKNDDNEYASVSASEHETTTSLLKRQRENDDDGSDRDPQSEGLRVSTKVACDGEWSLKEKVCLTTSFRDGKIFSFPFKAVRYGGADLRVNVSCSTTSQPSELWKPIEE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03211 241 MobiDBLite consensus disorder prediction 153 175 - -
Pste1g03211 241 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Pste1g03211 241 MobiDBLite consensus disorder prediction 142 178 - -
Pste1g03211 241 CDD Bbox1_BBX-like 3 45 - -
Pste1g03211 241 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Pste1g03211 241 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 165 - -
Pste1g03211 241 MobiDBLite consensus disorder prediction 79 104 - -
Pste1g03211 241 SMART bboxneu5 1 45 IPR000315 GO:0008270
Pste1g03211 241 MobiDBLite consensus disorder prediction 75 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03211 Pste-Chr1 14608268 14610638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03211 2 95 C2C2-CO-like Transcription Factor Family AT5G54470 58.947 6.06e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste1g03211 zf-B_box 5.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03211 1 14608268 14610638 Pste1g03211 1 14608268 14610638 ECH
Pste3g02835 3 21084679 21086111 Pste1g03211 1 14608268 14610638 PCT