Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g03192 | CAGCAACTTCTACATAGCATCTCCTTTTCCATCTTTCATAGATACAAGATAACTTTGCAACTCCCTTAGGTTTAAAAAAAACAACGCAAGCATCAAGATGGCCTCTTCCGACAGCAACATGTTACTAAACTACGTTCCAGTTTATGTCATGCTCCCACTGGGAGTTATCACTGTTGAAAATGTTTTTCAAGACCCAGATGGCGTTAAAGAACAGCTCCTGCAACTACGAGAATCAGGTGTTGATGGGGTCATGGTTGATGTGTGGTGGGGGATCATAGAACTGAAGGGGCCTAAGAAGTATGATTGGAGTGCCTATAGGTGCTTGTTTCAGCTGGTTCAGGAATGTGGCTTGAAACTCCAAGCTATTATGTCATTCCATCAATGTGGAGGGAATGTGGGAGATGTAGTTTACATCCCAATTCCCCAGTGGGTGCTTGACATTGGAGAATCAGATCCTGATATCTTCTACACCAACAGCTCAGGCACCAGGAACAAGGAATATCTAACTATTGGTGTGGACAACCAGTGTATCTTCCATGGAAGAACAGTCATTGAGATATACAGTGATTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAGAATCTGGGCTTATTATAGACATTGAAGTTGGGCTTGGCCCAGCAGGAGAGCTCAGATACCCCTCTTATCCACAAAGTCAAGGATGGGTATATCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTGAAGGCAGATTTCAAAGCAGCTGTAGCAAGGGCATGCCATCCTGAATGGGAACTTCCAGATGATGCAGGCAAGTACAATGACGTCCCAGAATCTACAGGGTTCTTCAAATCAAATGGCACATATGTCACCGAGAAGGGGAAGTTCTTCTTGACTTGGTATTCTAACAAATTGCTGAATCATGGTGATCAAATCCTAGAAGAAGCCAACAAAGCTTTCCAGGGCTGTAAAGTCAAACTAGCAATCAAAGTATCTGGAATCCACTGGTGGTACAAAGTTGAAAATCATGCTGCCGAGCTTACTGCTGGATATTACAACCTTAATGATAGAGACGGATACCGCCCCATTGCAAGGATGCTGTCTCGCCATCATTCCATTTTGAATTTTACATGTCTTGAGATGAGGGACTCAGAACAAAGCTCAAATGCCAAAAGTGGACCAGAGGAGCTTGTTCGGCAGGTACTAAGTGGTGGTTGGATAGAAAACATTAAAGTTGCTGGAGAGAATGCACTTTCAAGGTATGATGCTACAGCTTACAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAAAAATGGCCCTCCAGCATTAAGGATGTTCGGATTTACATATCTTCGTCTATCAGATAATTTACTGCAACAATCAAATTTTGATATATTCAAAAAGTTTGTGATAAAAATGCACGCAGATCAGGATTACTGTGCAGACTCTCAAAAGTACAATAATGGCATAGCACCATTGAAGCCATCGGCACAGAAGATTCCCATTGAGATTCTTCTTGAAGCGACTAAGCCAATACCGCCATTCGCCTGGCTTCCAGAGACAGACATGAAAATTGATGGTTGACTTTGGTGCAAAGAGTAATTAAAGGACCTGCTGGAAATACTATCTACGACTACCACGGGTTATAAATAAAGCATCTGTAACACTATTATGAATGCCATGATTTAGCAATGTCTAAGCATCTTGACAGTACTCGCGTGTGTACTTTTCATGTGTGTATTCCTATCTATAAAGTTAATAAACTACTTTCTCAGACTTGCGTAAATCCTTATTATTGCAACACCAAAATCTCCATCTCTAAAATGGTGAACATTGCTTAGATAGCATATAGCATATTTTAAGTATCAACTTACAGTAGAT | 1885 | 0.4085 | MASSDSNMLLNYVPVYVMLPLGVITVENVFQDPDGVKEQLLQLRESGVDGVMVDVWWGIIELKGPKKYDWSAYRCLFQLVQECGLKLQAIMSFHQCGGNVGDVVYIPIPQWVLDIGESDPDIFYTNSSGTRNKEYLTIGVDNQCIFHGRTVIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWVYPGIGEFQCYDKYLKADFKAAVARACHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILEEANKAFQGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHSILNFTCLEMRDSEQSSNAKSGPEELVRQVLSGGWIENIKVAGENALSRYDATAYNQIILNARPQGVNKNGPPALRMFGFTYLRLSDNLLQQSNFDIFKKFVIKMHADQDYCADSQKYNNGIAPLKPSAQKIPIEILLEATKPIPPFAWLPETDMKIDG | 496 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 291 | 307 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 47 | 61 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 363 | 385 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 183 | 205 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 90 | 111 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 68 | 86 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 308 | 319 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 255 | 274 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 326 | 349 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | ProSitePatterns | Beta-amylase active site 2. | 183 | 193 | IPR018238 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | FunFam | Beta-amylase | 4 | 471 | - | - | |
| Pste1g03192 | 496 | Gene3D | Glycosidases | 2 | 496 | - | - | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 418 | 432 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 173 | 182 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 400 | 416 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 371 | 380 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 385 | 394 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 433 | 447 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | PRINTS | Plant beta-amylase signature | 329 | 339 | IPR001371 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | ProSitePatterns | Beta-amylase active site 1. | 94 | 102 | IPR018238 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | SUPERFAMILY | (Trans)glycosidases | 9 | 491 | IPR017853 | - | |
| Pste1g03192 | 496 | PANTHER | BETA-AMYLASE 1, CHLOROPLASTIC | 10 | 450 | IPR001554 | GO:0000272|GO:0016161 | |
| Pste1g03192 | 496 | Pfam | Glycosyl hydrolase family 14 | 16 | 438 | IPR001554 | GO:0000272|GO:0016161 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste1g03192 | Pste-Chr1 | 14479260 | 14482326 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g03192 | 5 | 494 | Glycoside Hydrolase | AT2G32290 | 66.802 | 0.0 | 700 |