Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03177 GTTGGTTTGGCACGCCTCAGATGAGTCTCACGCCAACTTGTCAAAAGACCCCTTCTTAGCCCTTTTCTTCTGTCACCCTCCCGTGTCAATTGAAACTTGGAAGCGATTTTTAATTTTAATTAATTCATTTTAAACCCCAGATATTTTCTTCAAGAAAAAAATAAATAAATGAAAACTAGTCAGAGAGAGAGAAGGGGTCGCGTTAAGGCACACAAGCTTTAAATGCGAGTTGGTTGTTTGTAGCTTCTTTTCAATCAATCTTCTCTAATGCTTATGGACTAAGCATTGCGCAAGAGCGCGTCTTTAATTCTTCTCGTTATTGTTGTTGTTGTTGTTGACATGTATTAATAACTCCTCCTTAAACCCCAATCTTCTTGTGACATCAAAGTCGTACCTTTCGCATATTTTCTTTGTGGGTTTCAAATCCGTCTCAAATTCCTGCAATTTCTCAGATACCCAGATGGAGTTTGTGCCAAATCCGTGTCCTTTGCGTTCTTCTTCTTTCGGGAATTTCATCGACAGGGTTAAACAGCTTGGTACCCTCGCCGTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTTTGCTTCGCATTAGTGGGCACTTTGTTGGGGGCTTTGACCGGAGCTTTGATAGGACAAGAGACCGAGAGTGGTTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTATTGATGTTATTGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGGCCAGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAACTTTGATGAGGTTCAAAACATCTTTGACACTGGTGGTTCCAAAGGCTTGTCTGGAGATTTGGTTGAAAAGATCCCCAAAATCAAAATTACCGCTGACAACAATCTTGATGCATCCGGTGACAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAAATAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAATTTTGTATATGCATAGCACAGACCGCTACAAAAGTCCTTTTTTTTTTTTTGTTTATAAGCTTATTTAATTCTAGGACTTACACATCTAGTGGGAGGCTTGCGGTTTGAGTGGTATATTTCATTGTACTAAAATTAGTGTAAAGAAAATTTTGAGATAAAACAGTTTCCACTTGTTGTATATGGATGAGTGATTGACCCATTTTCGTGCCCGTCTC 1326 0.4133 MEFVPNPCPLRSSSFGNFIDRVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETNFDEVQNIFDTGGSKGLSGDLVEKIPKIKITADNNLDASGDRVSCSVCLQDFQLGEIVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03177 216 CDD RING-H2_NIPL1-like 170 213 - -
Pste1g03177 216 SMART ring_2 171 212 IPR001841 -
Pste1g03177 216 Pfam Ring finger domain 170 213 IPR001841 -
Pste1g03177 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 216 IPR013083 -
Pste1g03177 216 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Pste1g03177 216 FunFam NEP1-interacting protein-like 1 131 216 - -
Pste1g03177 216 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Pste1g03177 216 SUPERFAMILY RING/U-box 158 216 - -
Pste1g03177 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 19 215 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03177 Pste-Chr1 14402612 14405170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03177 19 216 C3H Transcription Factor Family AT5G66070 71.495 2.31e-102 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03177 1 14402612 14405170 Pste7g01806 7 16654626 16656482 PCT