Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03112 CCCTCCATTAAATGCATTTGCACCCTCTCAATACGCTCTGCAATTACTCTTCGCTGCCACATTTTCCTCCATCTGTTCCCCACTTCCCTCTCTCCTTCAATGCCCTTGTCCCTATCCCTTCACCTTCATCCCCATAGCAAACCTTTTCTTTCTCTGTCACTCTAACCCTTCCCTCTTCACCTTTTTACTCTCAAAACAGATCTATCTACACTTTCATCTTCCTCCACTCACTGAATCCAAGGTTTCAACCTCTTCTTCTCTACCAAGGACTCCTCAAAACCCAACCAACCCTTGCTCAGTAAGAGAGAGAAAGTGACAGAGAGAGAAAAAGAGAGTCAATTATAACATACTTTGTTGGTGGTGGTTTTGAGTTTATGTGAAATATGGCAGCCGGAATGATATGATTCCGGCGACAAACATGCCCTCCATGATACCAAGGAACAACAACGTTGCTGTTGCTGTGTTTAGATCATCTTCACCTCTCACTCTTGCCCAGCCGAACCTGATGGACGTGTTGGAGATGGGTCAGAACACTTCGGAGAGTGAAGTCCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCAGGCAGTGAAAACCACGAAGGTGCCTCTGGTGAAGACCAAGACCCACGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAAGAACTGAGCAGGGAGTTAGGGCTAGAGCCACTGCAGGTTAAATTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAGCATGAGCGGCATGAGAATACACAGCTTAGAACAGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTATAGAGAGGCTCTTAGCAATGCTTCGTGTCCAAATTGTGGTGGACCAACCGCTATTGGAGAAATGTCATTCGATGAACACCACTTGAGGCTTGAAAATGCAAGACTTAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCCAAGTATGTAGGCAAGCCTGTGGTGAACTATTCAAATATTTCCCCTTCTCTCCCTCCTCGTCCTCTAGAACTTGGAGTTGGTGCTGGTTTTGGAGGCCAGCCAGGGATTGGTGTGGACATGTATGGAGCTGGTGATCTTCTGAGGTCAATTAGTGGGCCCACTGAAGCTGATAAACCAATAATAATAGAGCTAGCTGTCGCAGCTATGGAAGAGCTCATTGGGATGGCACAAATGGGCGAGCCTCTTTGGTTAACTACCCTTGATGGCACATCCACTATGCTCAATGAGGATGAGTACATTAGGTCCTTCCCTCGAGGAATTGGCCCAAAACCTACCGGCTTCAAATGTGAAGCTTCACGAGAAACTGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTTTCTGGTATAGTCTCAAGAGCCATGACTCTTGAAGTGTTGTCAACAGGGGTGGCAGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAATTACAACTACCTACACCTCTTGTGCCAACTCGTGAGAGCTATTTTGTAAGGTACTGTAAGCAACACGCTGATGGAACATGGGCAGTTGTGGATGTGTCTTTGGATAATTTGCGCCCAAGTCCTTCTGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGTTATTCAAAGGTCACATGGGTTGAGCATGTAGAAGTGGATGACAGAGGGGTTCATAACCTTTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGCGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGCGAAAGACTTGCTAGTGCCATGGCAACAAACATTCCCACTGTTGATGTTGGCGTGATAACAAACCAAGAAGGTAGAAAGAGTATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCGACGGCTCACACATGGACAACACTGTCTGGGACCGGAGCTGATGATGTAAGAGTGATGACTCGAAAGAGTGTGGACGACCCTGGAAGACCTCCTGGCATAGTTCTTAGTGCTGCCACTTCATTTTGGCTTCCAGTTCCACCTAAAAGAGTTTTTGACTTCCTCCGTGACGAAAACTCTAGAAATGAGTGGGATATTCTTTCGAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGTCGAGACACTGGAAACTGTGTCTCTCTACTCCGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGATTCAACTGGCTCTTTTGTGATTTATGCTCCAGTGGATATTGTTGCCATGAATGTAGTTCTGAATGGTGGAGACCCAGATTACGTGGCACTTCTTCCTTCAGGGTTTGCTATTCTCCCAGATGGTACCACATCGCATGGAAGTGGCATTGGTGAAACTGGGCCTGGTGGATCTCTTCTAACTGTTGCGTTTCAAATATTGGTTGATTCTGTTCCAACTGCTAAACTTTCTCTTGGATCTGTTGCTACTGTTAACAATCTAATTGCATGCACTGTTGAGAGAATCAAAGCTTCCTTAGCTGGTGAACCGGCTTGAGTTTCCAGACCTTGGATTGTGCGGTGTAGAGAAGGATGAAAGGGATGGTGTGGAAAAGGAAAAGGTGGTGAGAAACTTCGGCATATATTAGAAAGATGAGGAGAAGTCAAGAGCGCACCTTGCGTGATCCCTTCTCAGGACCCCAAAAGAGTAGTGAGAGGATTAAGGTTCGGGAATTGACTTCCCTAGACAATAGTAAACGTTAAGAGTGCATATTACGAACTTGCCACCCGTTACCATTTCTAAGACTAAATTTATATAGCTAGCTAGTTAGGTTAACCTTTTCAGTAACTAGGCTTTAACTTTAATGTAAAACTCCTGCCTTCTTTTTCGATTCTGATTTTGTGTGATTTAGTAGTAGCTCCGCCATTACTTGTTGCTGGGAAATAGTTTGCATCTTATATATACATCCTACTTTCTCATCAAATTATTAATCTCCTT 3103 0.4505 MIPATNMPSMIPRNNNVAVAVFRSSSPLTLAQPNLMDVLEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGSGIGETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLAGEPA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03112 753 Gene3D - 70 158 - -
Pste1g03112 753 FunFam Homeobox-leucine zipper protein HDG1 71 157 - -
Pste1g03112 753 CDD homeodomain 84 142 IPR001356 GO:0003677
Pste1g03112 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 748 IPR042160 -
Pste1g03112 753 Pfam START domain 275 494 IPR002913 GO:0008289
Pste1g03112 753 SUPERFAMILY Bet v1-like 265 496 - -
Pste1g03112 753 SUPERFAMILY Bet v1-like 513 745 - -
Pste1g03112 753 SMART HOX_1 82 145 IPR001356 GO:0003677
Pste1g03112 753 MobiDBLite consensus disorder prediction 49 82 - -
Pste1g03112 753 SMART START_1 274 494 IPR002913 GO:0008289
Pste1g03112 753 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Pste1g03112 753 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Pste1g03112 753 Coils Coil 147 167 - -
Pste1g03112 753 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pste1g03112 753 Gene3D - 321 491 IPR023393 -
Pste1g03112 753 FunFam Homeobox-leucine zipper protein GLABRA 2 274 493 - -
Pste1g03112 753 CDD START_ArGLABRA2_like 269 493 - -
Pste1g03112 753 MobiDBLite consensus disorder prediction 44 92 - -
Pste1g03112 753 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Pste1g03112 753 ProSiteProfiles START domain profile. 265 497 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03112 Pste-Chr1 14020461 14027709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03112 53 753 Homeobox Transcription Factor Family AT1G05230 80.993 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g03112 START 7e-60 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03112 1 14020461 14027709 Pste1g03112 1 14020461 14027709 ECH
Pste3g02900 3 21776276 21783075 Pste1g03112 1 14020461 14027709 PCT