Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03107 CTTATTATTATATGGTTTCAGTAGCTTATCTTTTGAGTTTCTGGGTATAATTGGACTATTGTGGTTAAACTCATACATATTTAGAAGCATCAAATAATGGATATGGAATTTTCTTGTTAGTACTGAATCCTAGATTTCTTGGCTCCCCCTCCACCAACATAGAATCTTTGGGCTCATGGAGTCCTGAGTATCCAACAACTATGATGGTGCTTACTTTTGTTTACTTTTTGTGCTGTTCCTCAAATGGTTTTGGCATTTGACTGGTGCTTAGTTGTATGTGCTGAATGGTGGTATGAACTGAAGCTTAGAGTTGCTCACTTTGAAGGAAGGGCCTCTTAGCAGCATGGCTATGAGGATAACAGTAACACTGTTCCTCTTGGTTTTCTGCTTCTGGATTCCCTTGGAAGTGGAGGGGAGGAAAGAGCCCTTTTCACCTACCAGTGTTTCCACTGTTTCTTCTGGACCGAAGGTTGTGAAGTTTGGTGCCCTCTTTACTGCGGATTCTGTCATTGGAAGATCAGCTTTACCTGCAATTTTAGCTGCTGTTGAAGATGTTAAATCTAGCACGAGCATTCTCCCTGGCATTGATCTGCAAGTTATTTTACTTAATACAAATTGCAGTCCGTTTCTTGGAACAATGGAAGGCTTCGTTAATCTTGTTGATCATGTAGCTCTGCAGTTGATGGAGAATGACGTAGTTGCTGTTGTTGGTCCACTATCATCTGGAGTTGCTCGTGTCATATCTCATATTGTTAATGAACTCCATGTACCTCTTTTATCGTTTGGAGCAACTGATCCCACTCTATCAGCTCTACAATACCCATATTTTGTTCGCACCACTCAGAATGACTATTTTCAGATGTTTGCAGTTGCAGACTTGGTTGATTATTACAGATGGAGGGAGGTAATTGCCATTTATGTAGATGATGACAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCGAAGAAACGAGCCAAGATCACTTACAAGGCTGCTTTTCCTCCTGGGGCCACCGAAGGTGATATCAGTGACTTGTTAAATGAAGTGAACTTAATGGAATCTCGGGTGTATGTTCTGCATGTGAATCCTGAAAATGGTTTGGCAATTTTCTCTATTGCCAAGAGGCTTAGAATGATGGACAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCAGCAGATCCACCTGATACTGACACAATGGATCTCTTACAAGGGGTTGTAGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAATACTTTTCTCTCCAGGTTGAAAAGCCAAAGACACAAGAAAAATATAAGCTTCAATTCTTATGCACTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGTGCCCTTGATGCCTACCTCAATGAAGGTGGGAATATATCTTTCTCCAGTGACCCTAAGTTACATGACATAAATGGAAGCATGTTGCAGTTAGCATCACTTCGTACCTTTGATGGTGGCCCACAGTTTCTCCAAACAGTTTTGAGTATGAACTTCACTGGTCTTAGTGGTCGAATTGAGTTTGACATGGACAAGAATTTAGTGCATCCAGCGTATGACATTCTAAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTGTCAGTAATAACACCCGAAACTCTATATGTGAAAAAATCGTCCAGCACATATACGATGAGCAATAAAAAACTGTACGATGTAATATGGCCTGGAGAGGTTACAATTACACCAAGGGGGTGGGTGTTTCCCAACAATGGACAGCCACTGAGGATAGCAGTCCCAAACCGAGTGAGCTACAAGGATTTTGTTGCTAAAGCCAAGAACCCCCCAGGGGTACAAGGATTTTGCATTGATGTCTTTGAAGCAGCCTTAAATTTGTTGCCTTATCCGGTCCCCCGACAATATATATTATATGGAAATGGTGAAAGGAATCCTAACTACAACGAACTTGTGGAACATATTGCACAAAATAAATTTGATGCGGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTCCTTGTTCCTTTGGTGGAGAAGAAGTCAAGCCCTTGGTCTTTCCATGAGCCATTCACTGCTCAAATGTGGGGTGTCACTGCTGCTTTCTTTCTTTTTGTTGGAACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTTCGTGGTTCACCAAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTATCAACAATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGGCGATTGGTGCTAATAATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACTGCTAGCTTAACATCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTAATCTCTAGCACTCAACCGATTGGAATTCAAGATGGTTCATTTGCACGGAAGTATCTAATAGATGATCTCAATATAGCTGAATCAAGGATAGTTACCTTAAAAAACATGGAGGATTATATTGATGCTCTACAGCGTGGCCCTAGTGGTGGAGGGGTTGCGGCAGTTGTTGATGAGCTTCCTTATATTGAAATCTTGATGTCCAACACAGCCTGCAAGTTCAGAACTGTTGGGCAGGAGTTCACTAAGAGTGGTTGGGGATTTAGGGACTCTCCCCTTGCTGTTGACCTGTCAACTGCCATTCTTCAACTCTCGGAGAATGGGGACCTGCAAAAGATTCATGACAAATGGCTTCATAAAAAGGAGTGTGCAACAAATGCTGTTGATTCAAACAAACTAGCTTTGACTAGCTTCTGGGGCCTCTTTCTTATATGTGGCATAGCATGTGCCATTGCCCTGATTGTTTTCTTTGCTAGAATCTTCTGTCAATATAACAAGTTCAGCCCTGAGGCTGAGAAGATTGACCAGGAAATGCAACCTGTCAGGTCTAGACGTCCAAGCAGAACTCCTAGCCTCAAGAAGTTGATGGTATTTGTAGATAAAAGAGAAGCAGAAATCAAAGAGATACTTAGAGAAAACAAAAAAAGGAGACACAGCCAGAGCTTGGAAGAACATTCTGTTTCATCAGCCACGTAG 3169 0.4169 MAMRITVTLFLLVFCFWIPLEVEGRKEPFSPTSVSTVSSGPKVVKFGALFTADSVIGRSALPAILAAVEDVKSSTSILPGIDLQVILLNTNCSPFLGTMEGFVNLVDHVALQLMENDVVAVVGPLSSGVARVISHIVNELHVPLLSFGATDPTLSALQYPYFVRTTQNDYFQMFAVADLVDYYRWREVIAIYVDDDNGRNGISVLGDALSKKRAKITYKAAFPPGATEGDISDLLNEVNLMESRVYVLHVNPENGLAIFSIAKRLRMMDSGYVWIATDWLPSVLDSADPPDTDTMDLLQGVVAFRHHIPDTDLKNTFLSRLKSQRHKKNISFNSYALYAYDSVWLAARALDAYLNEGGNISFSSDPKLHDINGSMLQLASLRTFDGGPQFLQTVLSMNFTGLSGRIEFDMDKNLVHPAYDILNIGGSGSRRIGYWSNHSGLSVITPETLYVKKSSSTYTMSNKKLYDVIWPGEVTITPRGWVFPNNGQPLRIAVPNRVSYKDFVAKAKNPPGVQGFCIDVFEAALNLLPYPVPRQYILYGNGERNPNYNELVEHIAQNKFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVVLVPLVEKKSSPWSFHEPFTAQMWGVTAAFFLFVGTVVWILEHRLNPEFRGSPRKQLITVFWFSLSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLIDDLNIAESRIVTLKNMEDYIDALQRGPSGGGVAAVVDELPYIEILMSNTACKFRTVGQEFTKSGWGFRDSPLAVDLSTAILQLSENGDLQKIHDKWLHKKECATNAVDSNKLALTSFWGLFLICGIACAIALIVFFARIFCQYNKFSPEAEKIDQEMQPVRSRRPSRTPSLKKLMVFVDKREAEIKEILRENKKRRHSQSLEEHSVSSAT 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03107 941 Gene3D - 485 599 - -
Pste1g03107 941 FunFam Glutamate receptor 485 601 - -
Pste1g03107 941 FunFam Glutamate receptor 727 832 - -
Pste1g03107 941 PIRSF IGluLR_plant 1 941 IPR017103 -
Pste1g03107 941 FunFam Glutamate receptor 168 327 - -
Pste1g03107 941 Pfam Receptor family ligand binding region 61 425 IPR001828 -
Pste1g03107 941 CDD PBP1_GABAb_receptor_plant 45 443 IPR044440 -
Pste1g03107 941 Gene3D - 63 416 - -
Pste1g03107 941 PRINTS Metabotropic glutamate GPCR signature 72 91 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pste1g03107 941 PRINTS Metabotropic glutamate GPCR signature 121 147 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pste1g03107 941 PRINTS Metabotropic glutamate GPCR signature 172 188 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pste1g03107 941 PRINTS Metabotropic glutamate GPCR signature 57 72 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pste1g03107 941 PRINTS Metabotropic glutamate GPCR signature 188 205 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pste1g03107 941 PRINTS Metabotropic glutamate GPCR signature 153 172 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pste1g03107 941 Gene3D - 168 441 - -
Pste1g03107 941 SUPERFAMILY Periplasmic binding protein-like I 39 482 IPR028082 -
Pste1g03107 941 CDD GluR_Plant 488 828 - -
Pste1g03107 941 FunFam Glutamate receptor 601 731 - -
Pste1g03107 941 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 899 IPR015683 -
Pste1g03107 941 SMART GluR_14 491 830 IPR001320 GO:0015276|GO:0016020
Pste1g03107 941 Pfam Bacterial extracellular solute-binding proteins, family 3 514 829 IPR001638 -
Pste1g03107 941 SUPERFAMILY Periplasmic binding protein-like II 468 830 - -
Pste1g03107 941 Gene3D - 722 832 - -
Pste1g03107 941 Pfam Ligand-gated ion channel 830 859 IPR001320 GO:0015276|GO:0016020
Pste1g03107 941 Gene3D - 600 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03107 Pste-Chr1 13988508 13994688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03107 41 798 Ion Channels AT1G05200 65.699 0.0 1062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03107 1 13988508 13994688 Pste1g03107 1 13988508 13994688 ECH
Pste1g03107 1 13988508 13994688 Pste3g02903 3 21806652 21822425 PCT