Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03073 AAATAAGAATCACCTTTTCTACAAAGATGAGAATCTTCCAAAAGAATTTGCTAAACAATACGGAAATGGCATGTCAAACCCGGTGTACCTCAAACCTCCAGATGACATTGAATGGGAAATATGTTGGAGCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAAGAGTTTGCCACATACTATTCACTGGCTCATGGACACTTGTTGTTCTTTGAATACGACGGAACTTCTCATTTTGATGTGCATATATTTAATAGTAGTGCCCTTGAAATACACTATCCTTCCCACGGTACTCATGGTGCAAAGACCAACCCTGTGGAAATTAGTGATGATTCTGTTGATACTTTGGATAAGCCATCTTTCTGTCAAAAGAGTAGAGTGAAAGCAACAGTGCCATTTCCTCGAGCTTATCAGAAAATGAAGAATAGCAAAATTTCAAATGGTAAAATAAGCTCCAATGGGGTAAACTTGCATCAAGAGGATAAGATTATGAAGCAAACAGTAGATGAAGATGAAAATAATAGCATTTTGAACGGTGAATGCAAAGGGGAGCAATTAACTTCTCCTGCTTTAAACAAAGGCACAACTTTCAGAACCGAGTATCCCTCTTTTAGGCTTGCCATGAATCAATCCTTTGTTAATGATGGATATTCCCTGGAAATACCGCAGCATTTTGCAGAAAAATATTTGAAAAAAACACGTGCAGTCGTCACCCTTCAGATCTCGGATGGAAGAAGTTGGCCTGTTATTTACTCTGCTCCTAGACTTACTGTAGGATGGTCGAAATTTGCATCAGAAAATAATTTGAATGTAAGAGATATTTGTGTTTTTGAATTGATGGAAAAAATTCAAGGTCTTCGGTTCAAAGTTTCCATTTTTCAAGGTGCAGAGGAACCAAATTCCCCCGATTCACTAGGTGAGAGCTCAAGTCAAAGAACTTCAAAGATAGAAAGCCGCTTCAAGTTGAAAATCTTAGCAACCAGGGCATTTGAAAGTGCTAACAAATTCAGATCAGAAAATCCGTTTTTCATTATCTCTTTAACTCAAAAAGTAGCCACAAACATAACCAGACACATGCATGTGCCGCTGAACTTTGCGAGAAAGTATTTTGCAAACATGAACCAGAAAATGATGATGATACAGTTTAGAAAGAAATTGTGGCCTGTGAAGTTTGTATTTGTAAGTACATGCAGATTCTCTACTGGTTGGAGCTCATTTGTAAGAGATAATAAATTGCAAAGGGGAGATGTATGCGTCTTTGAACTTGTCAATAGAGAAGATGCTACACTTGATGCT 1300 0.3777 MSNPVYLKPPDDIEWEICWSKHDGEIWFQKGWKEFATYYSLAHGHLLFFEYDGTSHFDVHIFNSSALEIHYPSHGTHGAKTNPVEISDDSVDTLDKPSFCQKSRVKATVPFPRAYQKMKNSKISNGKISSNGVNLHQEDKIMKQTVDEDENNSILNGECKGEQLTSPALNKGTTFRTEYPSFRLAMNQSFVNDGYSLEIPQHFAEKYLKKTRAVVTLQISDGRSWPVIYSAPRLTVGWSKFASENNLNVRDICVFELMEKIQGLRFKVSIFQGAEEPNSPDSLGESSSQRTSKIESRFKLKILATRAFESANKFRSENPFFIISLTQKVATNITRHMHVPLNFARKYFANMNQKMMMIQFRKKLWPVKFVFVSTCRFSTGWSSFVRDNKLQRGDVCVFELVNREDATLDA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03073 410 SUPERFAMILY DNA-binding pseudobarrel domain 315 402 IPR015300 -
Pste1g03073 410 ProSiteProfiles B3 DNA-binding domain profile. 182 274 IPR003340 GO:0003677
Pste1g03073 410 SMART B3_2 320 407 IPR003340 GO:0003677
Pste1g03073 410 SMART B3_2 182 274 IPR003340 GO:0003677
Pste1g03073 410 SUPERFAMILY DNA-binding pseudobarrel domain 176 272 IPR015300 -
Pste1g03073 410 Gene3D - 303 410 IPR015300 -
Pste1g03073 410 Gene3D - 162 275 IPR015300 -
Pste1g03073 410 ProSiteProfiles B3 DNA-binding domain profile. 322 410 IPR003340 GO:0003677
Pste1g03073 410 Gene3D - 1 66 IPR015300 -
Pste1g03073 410 CDD B3_DNA 180 271 IPR003340 GO:0003677
Pste1g03073 410 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Pste1g03073 410 Pfam B3 DNA binding domain 334 407 IPR003340 GO:0003677
Pste1g03073 410 Pfam B3 DNA binding domain 190 272 IPR003340 GO:0003677
Pste1g03073 410 SUPERFAMILY DNA-binding pseudobarrel domain 3 65 IPR015300 -
Pste1g03073 410 CDD B3_DNA 319 404 IPR003340 GO:0003677
Pste1g03073 410 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 307 402 IPR044837 -
Pste1g03073 410 CDD B3_DNA 2 63 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03073 Pste-Chr1 13775292 13777550 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03073 286 408 B3 DNA Binding Superfamily AT3G18990 34.127 2.37e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste1g03073 B3 9.8e-14 CL0405