Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03070 ATGATAGAATCCTTGCAGAAACTCCCACGAAATTTCACTAGAAAATATGGAGACGAAATGTCAAATCCGTTGTTTCTCAAACCTCCAGATGGCTCTGAATGGAAAATACATTTGACAAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCATGTACTATTCCCTAGATCATGGCCACTTGCTGTTCTTTGAATATAAGAGAACTTCTCATTTTGATGTGCTCATATTTGACAATAGTGCAGTTGAAATTGACTATCCTTATCCTTCACCTCCTGACGTGAAGGACAATCCAGTACTGATTGGTGATGATGATTCTGTTGAAACTTTGGATCAACAATTTTCATCCAAAAACACTAGAGTGAAAACAACAGTGACATCTCCTCCACTCTTTAAGAAAATGAAAAATAGCATAACAACAAATTTCGAAAGAAGCCTTAGTGGAGTAAACTTGCATCAGTATGAACAGACTAGAAGTACTTGCTATCAAGGGGCAAATTTAATGAAGCAAAAATTAGAGGAAGACGAGGGTGAAGACAATTTTCAATATAAATGCCCAAAAGTGGAGCCATTAACTTCAACTGCTTTAAACGAAGCTACAACTTTCAGTTCTGAACATCCCTCTTTCATGCTTGTGATGAAACCATCCTTTATTAAAGGTGATTATTTGGAAATACCGCCACAATTTTCAGATAAATACTTGAAGAGAACACATGCTGTTATCCTCCTTGAGATCCTGGATGGGAGAAGGTGGCCAGTTATTTGCTCGGCTCCTAGAATTACTGGGGGATGGCATAACTTTGTATCAGAAAATAACTTAAATGTGGGAAATGTATGTGTTTTTGAGATGATCCACAAGATCCAAGGCCTTGCTTTCAAAGTTTCAATATTTCGGGATGCACAGGAACTAAGTAGCCCTATTTCACAAGGTGGGCGTCCAAGTCAAAGATTTTCACAGTCTGAAAGTCACTTCAAGTCACAGATCTTAACAAGCAGAGATCTTATAGAAGCTACCAAATTCACATCAGAAAATGCATTTTTCATGGTCATTTTAACAGATGAGAAGGAAAATATAGTCAGACGTCCGGTTGTGCCGATTAACTTTGTCAGGGAGTATCTTGTAAACATGAGCCACCAGAATGTGATGATGATGCAGTTTCGAAAGAAATTGTGGCCTGTAAAGCTTTCATTTACTGAAAACAATAGAGGCACCATCACTAGATGCTCCTTCTCTGCTGGTTGGCACTTATTTTCAAGAAAAAATAAACTGCAACCAGGAGATGTTTGTATCTTTGAGCTCATTAATAAAGAAGATGCAATATTTAATCTTCATGTTTTCAGAGATCACAGTAAGGCAAATATACCAAGATGCCCGAGGGTGCCGGCTAACTTCGTCACAGAGTATTTTGTGAACATGAAGCAGAATGTGTTGATGATGCAGTTTAGAAACAGTTCGTGGCCTGTGAAGCTTGTATTGAATGAACACGATAAATCAGGCACCCTCTCTGCTGGTTGGTCCTCGTTTGCAAGAGAAAACGAGCTAGAACCTGGAGATGTTTGCATCTTTGAACTTGTCAATGGAGAAAATGCCACATTTGATGTTCATGTTTTCTGTGGTCACAATGAAAACCTTTGA 1647 0.3862 MIESLQKLPRNFTRKYGDEMSNPLFLKPPDGSEWKIHLTKHDGEIWFQKGWKEFAMYYSLDHGHLLFFEYKRTSHFDVLIFDNSAVEIDYPYPSPPDVKDNPVLIGDDDSVETLDQQFSSKNTRVKTTVTSPPLFKKMKNSITTNFERSLSGVNLHQYEQTRSTCYQGANLMKQKLEEDEGEDNFQYKCPKVEPLTSTALNEATTFSSEHPSFMLVMKPSFIKGDYLEIPPQFSDKYLKRTHAVILLEILDGRRWPVICSAPRITGGWHNFVSENNLNVGNVCVFEMIHKIQGLAFKVSIFRDAQELSSPISQGGRPSQRFSQSESHFKSQILTSRDLIEATKFTSENAFFMVILTDEKENIVRRPVVPINFVREYLVNMSHQNVMMMQFRKKLWPVKLSFTENNRGTITRCSFSAGWHLFSRKNKLQPGDVCIFELINKEDAIFNLHVFRDHSKANIPRCPRVPANFVTEYFVNMKQNVLMMQFRNSSWPVKLVLNEHDKSGTLSAGWSSFARENELEPGDVCIFELVNGENATFDVHVFCGHNENL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03070 548 ProSiteProfiles B3 DNA-binding domain profile. 351 453 IPR003340 GO:0003677
Pste1g03070 548 CDD B3_DNA 350 451 IPR003340 GO:0003677
Pste1g03070 548 CDD B3_DNA 8 82 IPR003340 GO:0003677
Pste1g03070 548 PANTHER B3 DOMAIN-CONTAINING 296 445 - -
Pste1g03070 548 Gene3D - 194 305 IPR015300 -
Pste1g03070 548 Gene3D - 333 454 IPR015300 -
Pste1g03070 548 Gene3D - 455 544 IPR015300 -
Pste1g03070 548 CDD B3_DNA 463 542 IPR003340 GO:0003677
Pste1g03070 548 ProSiteProfiles B3 DNA-binding domain profile. 1 84 IPR003340 GO:0003677
Pste1g03070 548 Pfam B3 DNA binding domain 364 451 IPR003340 GO:0003677
Pste1g03070 548 Pfam B3 DNA binding domain 216 302 IPR003340 GO:0003677
Pste1g03070 548 Pfam B3 DNA binding domain 463 541 IPR003340 GO:0003677
Pste1g03070 548 Pfam B3 DNA binding domain 7 83 IPR003340 GO:0003677
Pste1g03070 548 SMART B3_2 2 84 IPR003340 GO:0003677
Pste1g03070 548 SMART B3_2 213 304 IPR003340 GO:0003677
Pste1g03070 548 SMART B3_2 351 451 IPR003340 GO:0003677
Pste1g03070 548 SMART B3_2 453 545 IPR003340 GO:0003677
Pste1g03070 548 CDD B3_DNA 211 302 IPR003340 GO:0003677
Pste1g03070 548 SUPERFAMILY DNA-binding pseudobarrel domain 206 302 IPR015300 -
Pste1g03070 548 ProSiteProfiles B3 DNA-binding domain profile. 464 544 IPR003340 GO:0003677
Pste1g03070 548 SUPERFAMILY DNA-binding pseudobarrel domain 345 451 IPR015300 -
Pste1g03070 548 SUPERFAMILY DNA-binding pseudobarrel domain 462 542 IPR015300 -
Pste1g03070 548 Gene3D - 2 85 IPR015300 -
Pste1g03070 548 ProSiteProfiles B3 DNA-binding domain profile. 212 304 IPR003340 GO:0003677
Pste1g03070 548 SUPERFAMILY DNA-binding pseudobarrel domain 7 84 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03070 Pste-Chr1 13739399 13744337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03070 464 541 B3 DNA Binding Superfamily AT3G18990 29.487 8.49e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste1g03070 B3 4.9e-13 CL0405