Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03043 CTCAGTTTCCTGCCCCATTCGTATTTTATTTTATTTTTCCACTTTTCAGGTTTGGAAGGCGGCACCTCCAAATCGGACCATTGTTCCTCTTTTCGTTCCAATCCCCTGTTCGGACCCAACACAACACCTCCTCCTCAAGTTTCTCAAAACACATATAACTAGGAAACGTGAAACCTTCCTTAACCTTTGCCACTTTCTTTAATTAAAAAGAACAAGACAAAAGCACCCCCCAACTCCCCCTTTTCCCTCCCAAGCTTCGTTTTTTACCTGCTGGGGTTTCTTAGATTCCAATTTTGCATCCACAATGTTCAACGGTATGATGGATCCTGATTTGATCAGAATCGCTCAAGAGCAGATGAGCCGCATGTCTCCTGCCGAGTTGGCACGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAATATGAGTACTGAAGACTTTAAACTCGCTGCTGAGCAGCTAAAGCATACTCGTCCTGAAGAAATGGCTGAGATTGGTGAGAAGATGGCTAACGCGACCCCTGATGAAGTTGCAGCAATGCGTTCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAATTTCATAGTCAAGGAAGGTACAATGATGCTTTGAAGAAGTATATGCTTGCTAAGGAAAACATTAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTCTTGGCATGCTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGACAAGCATACAAGGAACTAGGTCTGCTAAAAAATGCTGTTTCTGATCTGAGCAATGCACTTGAAGTGTCCCCTGATGATGATATGATTGCAGAGCTTTTACGGGATGCAAAGGAAAAATTGACAATGCAAGGTGGTGAGCATGCACCTGGAAGATTAGTAATTGAAGAAATTACTGAAGAAGATGAGAATCTGCCATCTGGAAACAATAGCTCTTCTTTGGAACGAAATGTGGTTCAACCAAAACAATCTGGTGGCTCCTCTAAGAATTGCACTACAGCTAACAATGAATATCCAGAAACAAATACAGACAGTTTAGAAACATTGAGAAAAAATCCTGAAGCTGTCAGATCATTCCAAAACTTCATTTCAAACACTGATCCTTCCATGCTTGCTTCTTTGAACACTGGACAATTCAAAGACGTGTCTCCAGATATGATTAAAACTACCTCTGATATGATTAGTAAGATGTCACAGGAGGAACTTCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCCATTTTTTAGAGGAGGTTCCCCTGATTCTTCTTTCAACCCAGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCCTCAGATGAGCTTAAGAAAATGTTTGAAATGACTTCCTCACTGAAAGGGAAAGAATCTATCCCATCAGCAGCAGCAGTGGGTGGGAACGAAAGATTTTTTTCCCATTCAGACTTCCCATCATCGAGCACTAATGGAATTACTGCTTCTGGAGAATCAAGTTCTCAAAATGTGTTTTCAAGTATGAGAAATCCTTCTCAGTCAAACTTCCCTTCCTCAAGTACTGATATACAAGAACAAATGAGAAATCAGATGAAGGATCCAGCTATGCGGCAGATGTTCACATCCATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAGGAAGCAGCAAGAGCTCAGAAAGCAGTGTCATCCTTATCCCCTGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGTGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGTATGATCTTTGCCATATGCATGCTCATTTTGGCTATCATTCTTCACCGTTTAGGGTTCATTGGTGGCTAGAGTAAGCGGCAAACATTTGTGAGATTCCTTAGGCATTCAAACTCAGGCATAACCTTCTTGTGTGATGAGATGATTGAATTGAATATATTGTCTCAGCCAAGAGACAATGGAGAGAGGAGGGGACATACCATTGGTTATCTGGAAAGCAATGCCAAAATGGCATCTCATCAGATATGTCCAATTTGAGGATGTGATTGGCACTTTTTTTTGTAATATATTAGCCTTTTGGTTGCCATTTAGCACTGGGAAGGACCCTACCATTCAATAAATGTGTAACCTTTTTATCATTTTTATATTCTAATCGTAATCCTAATGTAGCACTGGTTTGGGTAATTTATTTATAAAATGTACACGATTCCTTCTTTTTTTTTTTATGCTTTTCTCACTCAA 2455 0.4073 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSTEDFKLAAEQLKHTRPEEMAEIGEKMANATPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNEFHSQGRYNDALKKYMLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKNAVSDLSNALEVSPDDDMIAELLRDAKEKLTMQGGEHAPGRLVIEEITEEDENLPSGNNSSSLERNVVQPKQSGGSSKNCTTANNEYPETNTDSLETLRKNPEAVRSFQNFISNTDPSMLASLNTGQFKDVSPDMIKTTSDMISKMSQEELQKMLDMASSFQGDNPFFRGGSPDSSFNPGSMPPNVTPDMFKAASDMISKMPSDELKKMFEMTSSLKGKESIPSAAAVGGNERFFSHSDFPSSSTNGITASGESSSQNVFSSMRNPSQSNFPSSSTDIQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAARAQKAVSSLSPESLDKMMLWADRIQRGVESVRKTKNWLLGKPGMIFAICMLILAIILHRLGFIGG 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03043 586 Gene3D Tetratricopeptide repeat domain 89 234 IPR011990 GO:0005515
Pste1g03043 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Pste1g03043 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Pste1g03043 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Pste1g03043 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Pste1g03043 586 MobiDBLite consensus disorder prediction 435 477 - -
Pste1g03043 586 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 363 - -
Pste1g03043 586 MobiDBLite consensus disorder prediction 250 291 - -
Pste1g03043 586 SUPERFAMILY TPR-like 96 227 IPR011990 GO:0005515
Pste1g03043 586 MobiDBLite consensus disorder prediction 248 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03043 Pste-Chr1 13543580 13548624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03043 93 227 Calmodulin-binding Proteins AT5G48570 34.043 1.04e-15 78.6