Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03031 GTTGAACCATAAGCAGGCATGCTGGCTCTCTTTTAAGTCTTTTTTTTACCATTGGTTCTGATTCAAGTCTGACACAAGGGTGGGAGTGAGTGCAATTCTGGCTTCAAAGCAGGTGGGAATGGTACTGTTGGACTTGGTTTGAGGTTCCTCTTCTGATGTAAAACATGACATGTAACAAAAACAAACCAAGTTGGAATTGGTGGTGTTAGCTAAATCATTCAAAACCTGCTCCTTACTTGCCTCTTTCTTAAGATACAACTTGATCGAGTTTTGTTTGGTTGATAAATAATAAGTTTCTGGTGATACTTGAACCCAATGGAGAGAAGAGGGGATGTTGCTCTCGTTTTTTTAGCTTTGTTCTTCTTGTGCACTTCAGTGGCTGGTTTGCTTTCTCCTAAAGGTGTCAACTATGAAGTTCAAGCTCTGATGAGCATTAAATACTCTCTTGTGGATCCTCATTCTGTCTTAAATAACTGGGATGGTGATGCTGTGGATCCTTGCAACTGGGCCATGGTCACATGTTCTTCTGATCATTTTGTGACTGCCCTAGGGATTCCAAGCCAAAGCATATCTGGCACTCTCTCACCAAGCATAGGCAATCTAACAAACCTCCAGACTGTGCTTCTGCAGGATAATAATATAACTGGACCTATCCCCTTTGAGATTGGAAGACTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTTTTCACTGGTCAACTTCCAGATTCTCTTTCCCATATGAAGGGTCTCCATTATTTGCGGCTAAACAATAACAGTCTCACCGGACCAATTCCTTCCTCTTTGGCTAACATGACTCAGCTAGCCTTTCTGGATATCTCTTATAATAACTTGAGTGAACCTGTTCCAACAATAAATGCAAAAACGTTCAATATTGTCGGCAATCCTCAGATATGTGCCACTGGAGTTGAAAAGAACTGTTTCAGAACGACACCAATTCCTTCTGCTCCAAACAATTCTGAAGATTCGCTATCCACCAAAAGACCAAAGAGTCACAAAGTTGCCTTGGCGTTTGCTTCAAGCTTAAGCTGCATATGCTTACTAATTCTAGGACTTGGCTTCCTCATCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTTAATGAACAAAACCGTGAAGAGATTTGCCTTGGAAACCTCAAGAAGTTCCACTTCAGAGAACTTCAGCTTGCTACAAATAGTTTCAGCAGCAAGAACTTAATTGGCAAAGGTGGTTTTGGAAATGTATACAAAGGGTATCTCCAAGATGGTACTGTTATAGCAGTAAAAAGGCTTAAAGATGGTAATGCCATTGGAGGTGAGATTCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTTCATCGAAATCTTCTTCGCCTCTATGGATTCTGCATGACAGCTTCAGAGAGGCTCTTGGTTTATCCTTACATGTCAAATGGAAGTGTTGCTTCCCGTCTAAAAGCTAAGCCAGCTTTGGACTGGCCCACAAGGAAAAGAATAGCTTTAGGAGCTGGAAGAGGCTTGTTGTATTTGCATGAGCAGTGTGACCCAAAGATTATTCACAGGGATGTGAAGGCAGCAAATATATTGCTTGATGATTATTGTGAGGCTGTGGTGGGAGATTTTGGGTTGGCAAAGCTGTTAGACCACAGGGATTCACATGTGACAACAGCAGTTAGAGGCACTGTGGGGCACATAGCCCCTGAATATCTCTCAACAGGTCAATCTTCGGAGAAAACAGATGTATTTGGGTTTGGAATTCTTCTTCTTGAACTTATATCTGGCCAAAGAGCTCTTGAGTTTGGGAAAGCAGCAAACCAGAAAGGAGCCATGCTAGACTGGGTGAAGAAAATCCATCAAGAGAAGAAAATTGACTTGCTAGTTGACAAGGACCTGAAAAATAACTATGATAGGATAGAGCTTGATGAAATAGTTCAAGTGGCCCTTTTATGTACTCAATACCTTCCAAGCCACAGACCCAAGATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGTCTTGCAGAGAAATGGGAAGCCTCACAGAGAGCAGAATCAACAAGAAGTAGAGGCAATGAACTCTCCTCTTCAGAACGCTACTCTGATCTCACTGATGACTCTTCATTGCTTGCCCAAGCAATGGAACTTTCTGGACCAAGATGA 2181 0.4182 MERRGDVALVFLALFFLCTSVAGLLSPKGVNYEVQALMSIKYSLVDPHSVLNNWDGDAVDPCNWAMVTCSSDHFVTALGIPSQSISGTLSPSIGNLTNLQTVLLQDNNITGPIPFEIGRLQKLQTLDLSDNFFTGQLPDSLSHMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSEPVPTINAKTFNIVGNPQICATGVEKNCFRTTPIPSAPNNSEDSLSTKRPKSHKVALAFASSLSCICLLILGLGFLIWWRQRYNKQIFFDVNEQNREEICLGNLKKFHFRELQLATNSFSSKNLIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTASERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03031 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Pste1g03031 621 FunFam Somatic embryogenesis receptor-like kinase 1 378 590 - -
Pste1g03031 621 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Pste1g03031 621 MobiDBLite consensus disorder prediction 588 612 - -
Pste1g03031 621 SUPERFAMILY Protein kinase-like (PK-like) 280 571 IPR011009 -
Pste1g03031 621 SMART serkin_6 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03031 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Pste1g03031 621 ProSiteProfiles Protein kinase domain profile. 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03031 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 581 - -
Pste1g03031 621 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Pste1g03031 621 Pfam Protein kinase domain 302 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g03031 621 SUPERFAMILY L domain-like 32 304 - -
Pste1g03031 621 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Pste1g03031 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Pste1g03031 621 MobiDBLite consensus disorder prediction 578 621 - -
Pste1g03031 621 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Pste1g03031 621 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Pste1g03031 621 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03031 Pste-Chr1 13504617 13509432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03031 14 621 Receptor kinase-like Gene Family AT5G16000 74.554 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pste1g03031 Pkinase 5.6e-43 CL0016