Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g03030 | AACTCATAACTCATTCAGCTTGGAGCAAAGTCTCTGTTCTCCCGCCTCAACGCACATATGAGTGATATAAGGAAGTGGTTCATGAAAACACATGACAAGGGCAACAATGCCGCTGTGTCCAAGCCTTCCAATCAACCCAAGCCTTCTTCGGATAAACCACAGTCCGAGAAAACCGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATACAAACAAGGAAAAGGTGAAAGATGAGAAAGAAACACAGGAGCTCCCTGCTAAGAGAAAGAATACGAAGGTCAGTGAGGATATACCGGAGCCAAAGAAAATTATCGAAGATGATGGGGATGACTCTGTCTTGCCTGCTAGTAAAAAGAAGTTAGCTGAGAAGACTCCAACAAAAAAATTGAAGAGTGGGTCAGGTAAGGGGATTCCCCAGAAATCTGCAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGATGCTGTGTCTGCTGTTAAATCTGCGGGAAGGGGTGGTGGTGGAAGAGGAGCACCGGGGAGATCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGACCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGATTTACTTTTGTTATCAGTGGAACACTGGACAGTTTGGAGCGAGAAGAAGCTGAAGATTTGATCAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGTGGGAGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACTCCATTCCTCACAGAGGATGGCTTGTTTGATATGATTCGGGCATCAAAGCCTGCTAAAGCTCGTTCACAAGAAGACAAGAAACCTGTAAATAAAACTGTTGCAGTGGCATCCCAGTCAAAAGTTTCTACGAAATCACCAGTTAAGGTCCCTCTGGTTTCACGCTCACCTTCTAAGCAAGCCAGGCCAAAGACTACTGATGCTGTTCATTCTTCTTTGATGTGGACGGAGAAATATCGACCGAAAGATCCAAAGGATATCATAGGGAATCAATCACTTGTTTTACAGCTTCGAAATTGGTTGAAAGCTTGGCATGAGCAATTCTTGAACACGGGTAACAAAACACAGGGAAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTGTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAACCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATGGAAAAATTGAAAAAGGAATTGGTGGAAGCAAGACAAATTCTGTTAAGGAACTTATAACCAATGAGGCCCTTGGCGTTAATATGGAACGGCCAAAGCATTCCAAGTCTGTGCTCATTATGGATGAAGTTGATGGGATGTCAGCTGGTGATAGGGGCGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGATCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTAGGAAGCCTACAAAGCAACAGTATATGAGCCTCTCTATGTCAGTTATCAACTATGATGATATAAGGCAGCGATTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGACGAGAGAATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATCCAGGAGAATTATATTAATTATAGACCTAGCTTGGCTGGTAAGGATGACAATGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACCAGTTCCGTTGCAACATGCATTATTCCTGCTTCATTGTTGCATGGTCAAAGGGAAATACTTGAACAGGGTGAACGAAATTTCAATCGGTTCGGTGGGTGGCTGGGGAAGAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGATGATCTTCACGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTTTAGTTCTTAAACAATTGACAGAACCACTGCGATCCCTGCCTAAGGCTGAAGCAGTTCAACAAGTTGTGGAATTCATGAATACGTACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACGAAAGCGTACAAAGAACAAAGCACATCTCGGGTGGTTCGAGTTGCAGATCTAATAACTCTTCCTGGAGTAAAGAAGGCTCCTAAGAAGCGGATTGCTGCTATTCTTGAACCAGCTGAGGAAGGAGTTGAAAAAGGTGAAGGTGACGATGCTTTGGACGAGAGTGAAGAAGAGAACAGCTCTGATACAGAAGAGTTGGGAGGCACCACCAAGGGCGAGAAGCTGCAGTCAGAACTTCAAAGTTTGAATTCAAAGGCCATGCAAGTTCAGTTGGAACTGAAGGGAACGGGAAATTCTAGTTCCAAGAAAGCATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGCAGAAGGCTGCTCAAGCTCCAAAAACTACTTCAAAAAGAAAAAGGTGAATAAATATTGAACCATGTACCTTTCTCTGGAGCCACTATTTGGAGGAATTGTATAGAGCCCTTCTCTCTAGATTTTCAACCTACTTAAATTTTAGGTCGTTTTTTAGTAAATTTTCCAAAGAGGACATGGATTACTCGTGGCCCAGTTTTTTGAATGTAGATGATGTCTACGATAGAACTTAAAACTTTTTGCTTGCATATTATGAAGAATTCCTGGATTGAGTTGTTACTCTTCTCTTCCTTGATATTCTGCACGATATTATGTCACCTGGA | 3048 | 0.4242 | MSDIRKWFMKTHDKGNNAAVSKPSNQPKPSSDKPQSEKTESSGRRITSKYFNTNKEKVKDEKETQELPAKRKNTKVSEDIPEPKKIIEDDGDDSVLPASKKKLAEKTPTKKLKSGSGKGIPQKSAVLEESDEDDDKDAVSAVKSAGRGGGGRGAPGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGFTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTPFLTEDGLFDMIRASKPAKARSQEDKKPVNKTVAVASQSKVSTKSPVKVPLVSRSPSKQARPKTTDAVHSSLMWTEKYRPKDPKDIIGNQSLVLQLRNWLKAWHEQFLNTGNKTQGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCQELGFQPIEVNASDSRGKADGKIEKGIGGSKTNSVKELITNEALGVNMERPKHSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLVLKQLTEPLRSLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSTSRVVRVADLITLPGVKKAPKKRIAAILEPAEEGVEKGEGDDALDESEEENSSDTEELGGTTKGEKLQSELQSLNSKAMQVQLELKGTGNSSSKKASGGRGKGASASGQKAAQAPKTTSKRKR | 905 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g03030 | 905 | FunFam | Replication factor C subunit 1 | 328 | 516 | - | - | |
| Pste1g03030 | 905 | SMART | AAA_5 | 380 | 518 | IPR003593 | GO:0016887 | |
| Pste1g03030 | 905 | FunFam | Replication factor C subunit 1 | 167 | 270 | - | - | |
| Pste1g03030 | 905 | Gene3D | - | 328 | 516 | IPR027417 | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 812 | 905 | - | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 847 | 880 | - | - | |
| Pste1g03030 | 905 | Pfam | BRCA1 C Terminus (BRCT) domain | 193 | 268 | IPR001357 | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 817 | 837 | - | - | |
| Pste1g03030 | 905 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 548 | 693 | IPR008921 | GO:0003677|GO:0006260 | |
| Pste1g03030 | 905 | Coils | Coil | 846 | 866 | - | - | |
| Pste1g03030 | 905 | CDD | BRCT_RFC1 | 191 | 269 | - | - | |
| Pste1g03030 | 905 | ProSiteProfiles | BRCT domain profile. | 191 | 272 | IPR001357 | - | |
| Pste1g03030 | 905 | PIRSF | RFC1 | 1 | 524 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Pste1g03030 | 905 | PIRSF | RFC1 | 519 | 880 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 272 | 324 | - | - | |
| Pste1g03030 | 905 | SUPERFAMILY | BRCT domain | 191 | 272 | IPR036420 | - | |
| Pste1g03030 | 905 | Pfam | Replication factor RFC1 C terminal domain | 617 | 779 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Pste1g03030 | 905 | Pfam | ATPase family associated with various cellular activities (AAA) | 384 | 483 | IPR003959 | GO:0005524|GO:0016887 | |
| Pste1g03030 | 905 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 328 | 531 | IPR027417 | - | |
| Pste1g03030 | 905 | Gene3D | - | 549 | 658 | - | - | |
| Pste1g03030 | 905 | SMART | BRCT_7 | 193 | 271 | IPR001357 | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 33 | 112 | - | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 288 | 324 | - | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 1 | 193 | - | - | |
| Pste1g03030 | 905 | Gene3D | BRCT domain | 168 | 270 | IPR036420 | - | |
| Pste1g03030 | 905 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 17 | 521 | - | - | |
| Pste1g03030 | 905 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
| Pste1g03030 | 905 | CDD | AAA | 381 | 480 | - | - | |
| Pste1g03030 | 905 | FunFam | Replication factor C subunit 1 | 549 | 658 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g03030 | 1 | 859 | Core DNA Replication Machinery Family | AT5G22010 | 64.372 | 0.0 | 1031 |