Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03026 TTTTTTCACGGTTTCAGCCTTGTTACTTCCCTTAAGTACAGAGGCAGTGTCCTCCTCACTTTCTTTCTACAAGACTTTGTGGGGATTCTGATAAATTCATTTTACCACCACAACAAGCTATTTCATCTCATATCATATGCTCTTTCTCTTTTTCTTAAATCTTTCTTTCTTTTATATCTCTTCTTTCATCATGGCATGGCTGTTGAAATTATAATTACCCCTTTTGAGAAAGCACTCTCTTTCTTTGTCTCCTTCTCAAATGAGATCTTAACACTACCTAAAGGGTTAAACTTGTTCATGATGATACATCACTCTCCTCTGGTGGCAAGCACTAGTGGTTCTGAGCGTTGCTGCTGCTATATGGAGGCATTGAATGTGCCACACCACATCACACTCTCCCTAGCTGGACACTGGAAGCACCCTTTAAAAACCTCTCTCAGAATGAATGAGAAAAGATTGCTGCACTCGCTTCCCTCTCTAGCTTATTTATCATCTTCTTATAACCTCTTTCTTCTGGCAGCTATGCATTTTGTCTCTTTCTCTGCTCATTTTTCATTTCAAAGCTGCATGGTGTGCTTTGGAAGCACCTTTCTTGGGAATCTCCATATATATGTATCTTTCAGCTCTTGTTGTCACCAAAATTATGCAGCTTTCAGTTCTTGTTTTTTATGGTTTAGTGTTAGTGTTCCATACAGCAGTTTGCTTACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCGTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGTCACAGAAACAGCACCCAAGCTTTGAAGAACCAAGCTTTAAGGAACTGGGGTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTACAATCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCATAGGGAGGCTTTCAGCTCAGCAGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTCGTTAAAGCTGGATGGCAACAAGCAAGCAAAGTTGGACCAGGGAGAAGGAGGTGAAAAGTCTAATGGATTCTACTGATATAAATGGAAGCCTGTGAGTATGAGCTTGTTTTTTTCATGCTTGACCTAAATCAGTGAAAAATGAGGTTGATCAAATTTCCCAATCGTACAACTGGATGGGAGACTCCTGCAAATTAACCTCAGCCTCTCACCAATGTTTAATAGTACATGTATTGCCCTTTTCTATATATCGTTGTTATGAAATGATTGCTATTCTTGTGATTGCATTTATTGTGTTGAATCTGAGCTCTTAAGTAAACAACACTTTCCTCTATATATATTTATATTATAATGATGCTCTTTTATAATGATCATAAGCTAAAGTATTAGAGTCCTCTACA 1480 0.3939 FFHGFSLVTSLKYRGSVLLTFFLQDFVGILINSFYHHNKLFHLISYALSLFLKSFFLLYLFFHHGMAVEIIITPFEKALSFFVSFSNEILTLPKGLNLFMMIHHSPLVASTSGSERCCCYMEALNVPHHITLSLAGHWKHPLKTSLRMNEKRLLHSLPSLAYLSSSYNLFLLAAMHFVSFSAHFSFQSCMVCFGSTFLGNLHIYVSFSSCCHQNYAAFSSCFLWFSVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQSQKQHPSFEEPSFKELGSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGSLKLDGNKQAKLDQGEGGEKSNGFY 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03026 385 PANTHER PROTEIN YABBY 6-RELATED 214 371 IPR006780 GO:0007275
Pste1g03026 385 SUPERFAMILY HMG-box 306 354 IPR036910 -
Pste1g03026 385 CDD HMG-box_SF 315 351 - -
Pste1g03026 385 Pfam YABBY protein 215 360 IPR006780 GO:0007275
Pste1g03026 385 Gene3D High mobility group box domain 300 357 IPR036910 -
Pste1g03026 385 MobiDBLite consensus disorder prediction 260 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03026 Pste-Chr1 13453040 13458937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03026 215 385 C2C2-YABBY Transcription Factor Family AT1G08465 62.712 2.34e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste1g03026 YABBY 1.9e-55 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02956 3 22300762 22309863 Pste1g03026 1 13453040 13458937 PCT