Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02995 CTAGTAATTGTTATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGCTACTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATTAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTACAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGTCACAAAGACAAAAAATATCCAACAGGTACAAGAACTAATAGAGCTACCATGGCGGGGTTCTGGAAGGCAACAGGAAGAGACAAAGCAGTGTATGATAAGACAAAACTAATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGACTTGAATCTGATGAAAATGGACCTCCACAGGAGGAAGGATGGGTCGTGTGCAGAGCCTTCAAGAAAAAAACCAATGGACAAACGAAGGCTGTTGAAGGATGGGATTCAAGTTTCTTCTATGACGAAGCAAGTGGGGTAAGCACTGTGGTTGATCCAATTGATCTTATTTCAAGGCAGTCTCAGAGCTTTTTAGCTCAAAATTTCATGTGTAAGCAAGAGATAGCAGCAGATAACTTGATTAGTTGCTTGCATCAAGACCCATTTGCACAACTTCCTCAGCTAGAAAGCCCGTCTTTACCATTAGTGAAGAGGCCAAGCACAGTGTCCCTGGTATCAGATAATAACGAAGATAAAGAAATTCAAAACCAGTTATCCAACAACAGCACAAAGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACACGCATGAAACTAATGGACTCTTAAGCTTTGAACCCCATGATAACCACGACATGGCAATGCTGCTGCTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAACCAGTTTCTAAATACAAGTTCAGACTGTGATATTGGGATATGCGTATTCGAAAAATAA 1029 0.4208 LVIVMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTNGQTKAVEGWDSSFFYDEASGVSTVVDPIDLISRQSQSFLAQNFMCKQEIAADNLISCLHQDPFAQLPQLESPSLPLVKRPSTVSLVSDNNEDKEIQNQLSNNSTKKVTDWRALDKFVASQLSQEDTHETNGLLSFEPHDNHDMAMLLLQSSRDEGNRLNQFLNTSSDCDIGICVFEK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02995 342 Gene3D NAC domain 22 167 IPR036093 GO:0003677|GO:0006355
Pste1g02995 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 265 - -
Pste1g02995 342 ProSiteProfiles NAC domain profile. 13 162 IPR003441 GO:0003677|GO:0006355
Pste1g02995 342 FunFam NAC domain-containing protein 22 166 - -
Pste1g02995 342 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Pste1g02995 342 Pfam No apical meristem (NAM) protein 14 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02995 Pste-Chr1 13229964 13232495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02995 6 341 NAC Transcription Factor Family AT2G18060 66.033 1.39e-164 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g02995 NAM 2.5e-38 No_clan