Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02969 CGTGTTTTTGGCGTTGAAGAAAATAAGCCAGTGGCTCCCACATCACCTAGGCTCCCACTAACCACGTGGTGCTCGAGAAACACAGAATCGCGTACTGAAAAGGAGTTGCGTTTGACGATTCACAACTTTGAATTCTCACTAGATGAAAAATTGAAAACATGGAGAAAAAGCAAAGTAAAGAGAGAGAAAGAGAAATTAGGAGTCGGGCACATTCAACCAATCCGCAACCAGCATGTCGTCTACCTTCTTCTCACTGAGAGTATTGATTATTTTCCTTCGATTCGATTTCTCGTCGCTATGGAGCAGCCGCAGACCACCGTGGCTAGGGATTTGGAGGCCTCGCGACTGGTCGGCATCCCCGTCACGCTTGCTCGCGATGCTGATGCTCCGGGCTGGGGGGAGAGCCTAATTGCTGCGTGCCGAATTTGGCTGTCGCCGTGGTGGACGCGTGGCCGACCCGCCAAAGGAGCTCCTAAAGTGGCACCCCCGGTGAGACAGAAGAAGGATGAGGAGGACGTTTGTTTCATTTGCTTCGACGGCGGGAGCCTTGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCCTATCACCCCTCCTGTATTAAGCGAGACGAAGCGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTCTGTCAGAAGGCGTCACATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGTGGAATATGCATGAGGACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTAAAAGGGAAGCTGTCTTTAACACCAGAGGAGATCCTTCGAGCTAAAAACCCATGGAAATGTACTGCTCCTATGAGTTATAAGATTCATAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAGGCCCAAGAGACAGCCAAAGCTTTTTGGTAAGGGCGATTGCTTGAATAGGATAACTTCAGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGTACAAAATGGGCAACAAAGGAACTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCCCAATTTGATGTCCAGACTCTCTTGTTGGAGTATGCAAATAAAAATAATCTTCGTGATCCTCAACAGAAGTCTCAAATTGTTTGTGACACTAGACTATTAAGTTTGTTTGGAAAAGCACGTATTGGCCATATTGAAATGCTAAAGCTCCTTGAATCCCACTTTCTTTTAAAAGACAATGGTCCTGCACAAAATACTTTTGGAGCGGGAAATATTAATGCTGTTGTTAATGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTAATGACAAGAGATGTAAAACACATAATCCAGATGCCTATGCCGCAATAGATGTTCACAACATTAACTTGATCTACTTACGGCGAAGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGATAAGGTTGTTGGTTCATTTGTGCGCATAAGAATCTCTAGCAGTGATCAGAAACAGGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGTCGAACCTTACAAAATTGGCACAAGAACAACTGATATTAAGCTCGAAATTTTAAATTTAAACAGGAAAGAGGTGATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGTCTCTCAAAGAGATTGACAGTGGGAGAGATTCTAGACAAAGCATTGACACTTCATTCAATTCGAGTTAATGATATAAAATTATTGGGGTACCGAATTATAGGTCACTTAACTATGTCCACTAATCTAATTCATTTTGAATGGAATGATTATTATCTTCCACTCAACAATGGCATAGTGGATTTGGATTCAATACATGACTTTAGTGAAATGTTTGGGTTTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAATATCCTTTATAATTTACTATTTTATATTTCACTACTACTAAACTCTCCGGAGGAACGTCAACGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATAATTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGAAGCTCCATTTTTCCAAGAATTTCGAATGGTGTCTCTAATGACACGCCAGGCAAAACACAAGACTTGCCTGCTACCCAAGAAGCAGCTGGCAATGTAGGCACAGTGAAGAATAATATCAACTTTGACAATAGCACTAAAGCAGTTGTGAAATCAGAAGTGTCTGGTGGTGCATCGGAAATTTCACCTTCAGTTCTCCCTACTGGGATGCAGCAGTCATTTAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGACCCAAGGACCCTTTTCTATGTTGCATCTGTACAAGTGGAATTCAAGTGGAAGTTTCCCTCCAGATCTTCGAATATGGAGGACAGGGGAGAAACAGGACAACTCCATACTGTTAACTGATGCACTGAGTGGGAAGTGTTCCAAAAATGTGTCATTTCCATTCAACAGCCAATTGCTCTCTCTAGGTGGTAGTGTTTCATTGGATAATAAAGATAATAATCAGGATGATGGGCAGAATGCAAAGAATGAAATTTCTGCAGATGGCCAAATTACTGAACCGAGCAAGGAACCAAAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGATAAGCCTGTTAGGAGCAATGGATGGCATGGCCAGCTGCATGTATACCCTTCACCATTGTCAACTGGCATTACTGAGAAATTGAATGAGAACCCTTCTGATAAAATAAGGAATGATCATGTGATTCTGGGAAACTCCGAAGATAATGGAAATAATGGTTCGAATAGGACATCTAATGGCCAGAGTAATAGTGCGCAGAGTTATCAGAAGCCATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACATCAGGTCATGTTTCTGGTACAAAAACATCACCGCAGAAGCTGGGATTTGATTTGCAAAATCCTCCTTCCCCTCCAGCATGTAATACATCTTCTGGACAGACCTGGAATCACCCTAATGTAAATAGTTCTTCGGATTGCTTGGTTAACACATCAGCTCAGGTTTCTGGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACTGGAGAGACCTGGAGACACCCTGATATAAATGTTTCTTCCAATTGCTTAGTTACCACATCAGCTCATGTTTCTGTTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCTGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCATTTGGTGGCTTGGAATCTCCTACTTCAATTATGAAATGTGGTGAGGATTTGACTGGAGGTTCCAAAAATGATTGTCTTAGTTTTGTTGCAGAGCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGTGATTTAAATTTACCATCTCAACCCACAGCATCAGAGGAACCATTACGGCAAACAGATGTACATCAACATCACCATCAAAGAATTTCTGCGGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTAGGTACAAAGAATGCTAGTGTTTCCGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTGCCATCCCCTGGAACCTTGGGTCTTGCTGTCGACACTACTTGGAGACTTGGGTTAGAGAATACACACTTGGGATGGAATGGCATAGATCAAGGAAATGCAAATGTGGGTTGGGCTGTAGGACAGACAGCAGTGCAGGAAAACAGGAGTTCAAGTTCGTACACTTCTGTTGTAACTCCAGGCTTTGGGGATAGCCAAACAAGATATGGAAGTGATCGATTTTCTGTGCCCAGAGATCGGGGTTTTCAAGGTCATGGTAGGGAATCTGGTTTTGGTAGAAGCAGAATTCCACATAACAGGCAACAGTCATATGGTGTTGGAAATGGAGGATCTTATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCA 4515 0.4213 RVFGVEENKPVAPTSPRLPLTTWCSRNTESRTEKELRLTIHNFEFSLDEKLKTWRKSKVKREKEKLGVGHIQPIRNQHVVYLLLTESIDYFPSIRFLVAMEQPQTTVARDLEASRLVGIPVTLARDADAPGWGESLIAACRIWLSPWWTRGRPAKGAPKVAPPVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEAFFRSKAKWNCGWHICSVCQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENSAQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTPEEILRAKNPWKCTAPMSYKIHSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPKRQPKLFGKGDCLNRITSGGDSGVSLPECTKWATKELLEFVAHMKNGDTSLLSQFDVQTLLLEYANKNNLRDPQQKSQIVCDTRLLSLFGKARIGHIEMLKLLESHFLLKDNGPAQNTFGAGNINAVVNEGEAIDNYNKQLMLVNDKRCKTHNPDAYAAIDVHNINLIYLRRSLMENLTEDIEKIHDKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVVEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILDKALTLHSIRVNDIKLLGYRIIGHLTMSTNLIHFEWNDYYLPLNNGIVDLDSIHDFSEMFGFCWKLRYCGLIIFVIEQVKRGIEKNILYNLLFYISLLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIISKYLGFDRRERSSIFPRISNGVSNDTPGKTQDLPATQEAAGNVGTVKNNINFDNSTKAVVKSEVSGGASEISPSVLPTGMQQSFNDFLNDRSWHYQDPTGKTQGPFSMLHLYKWNSSGSFPPDLRIWRTGEKQDNSILLTDALSGKCSKNVSFPFNSQLLSLGGSVSLDNKDNNQDDGQNAKNEISADGQITEPSKEPKVDNTSTQSDGKDKPVRSNGWHGQLHVYPSPLSTGITEKLNENPSDKIRNDHVILGNSEDNGNNGSNRTSNGQSNSAQSYQKPSDSEENSGQSSGQTWRHPNVNSSSNCLVTTSGHVSGTKTSPQKLGFDLQNPPSPPACNTSSGQTWNHPNVNSSSDCLVNTSAQVSGTKTSPHKLGFDLHNPPSPPACNTGETWRHPDINVSSNCLVTTSAHVSVTKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESFGGLESPTSIMKCGEDLTGGSKNDCLSFVAELGPMLDAGKGDALSSTGDLNLPSQPTASEEPLRQTDVHQHHHQRISAEHSSRSSKVEVGTKNASVSGNQWDSGSENSPIVPSPGTLGLAVDTTWRLGLENTHLGWNGIDQGNANVGWAVGQTAVQENRSSSSYTSVVTPGFGDSQTRYGSDRFSVPRDRGFQGHGRESGFGRSRIPHNRQQSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02969 1505 SMART rtf1 521 631 IPR004343 GO:0003677
Pste1g02969 1505 ProSiteProfiles Plus3 domain profile. 521 654 IPR004343 GO:0003677
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1041 1130 - -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1430 1474 - -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 952 989 - -
Pste1g02969 1505 Gene3D - 522 651 IPR036128 GO:0003677
Pste1g02969 1505 SMART PHD_3 173 219 IPR001965 -
Pste1g02969 1505 SUPERFAMILY CCCH zinc finger 1480 1504 IPR036855 GO:0046872
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1437 1458 - -
Pste1g02969 1505 Gene3D SWIB/MDM2 domain 387 477 IPR036885 -
Pste1g02969 1505 SUPERFAMILY FYVE/PHD zinc finger 168 218 IPR011011 -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1294 1369 - -
Pste1g02969 1505 CDD PHD5_NSD 173 218 - -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 754 782 - -
Pste1g02969 1505 Pfam SWIB/MDM2 domain 399 469 IPR003121 -
Pste1g02969 1505 ProSitePatterns Zinc finger PHD-type signature. 174 234 IPR019786 -
Pste1g02969 1505 SMART gyf_5 878 933 IPR003169 GO:0005515
Pste1g02969 1505 FunFam Zinc finger CCCH domain-containing protein 19 522 651 - -
Pste1g02969 1505 CDD SWIB-MDM2_like 394 469 - -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1318 1340 - -
Pste1g02969 1505 SUPERFAMILY GYF domain 874 930 IPR035445 -
Pste1g02969 1505 ProSiteProfiles GYF domain profile. 877 931 IPR003169 GO:0005515
Pste1g02969 1505 FunFam Zinc finger CCCH domain-containing protein 19 163 263 - -
Pste1g02969 1505 CDD GYF 877 932 IPR003169 GO:0005515
Pste1g02969 1505 SUPERFAMILY Plus3-like 522 651 IPR036128 GO:0003677
Pste1g02969 1505 Pfam GYF domain 880 922 IPR003169 GO:0005515
Pste1g02969 1505 MobiDBLite consensus disorder prediction 990 1004 - -
Pste1g02969 1505 Gene3D - 879 935 IPR035445 -
Pste1g02969 1505 ProSiteProfiles Zinc finger PHD-type profile. 171 237 IPR019787 -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 952 1130 - -
Pste1g02969 1505 SUPERFAMILY SWIB/MDM2 domain 394 470 IPR036885 -
Pste1g02969 1505 Pfam Plus-3 domain 526 629 IPR004343 GO:0003677
Pste1g02969 1505 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 150 657 - -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1341 1366 - -
Pste1g02969 1505 ProSiteProfiles SWIB/MDM2 domain profile. 388 471 IPR003121 -
Pste1g02969 1505 ProSiteProfiles Zinc finger C3H1-type profile. 1480 1505 IPR000571 GO:0046872
Pste1g02969 1505 SMART swib_2 391 474 IPR019835 -
Pste1g02969 1505 MobiDBLite consensus disorder prediction 1301 1317 - -
Pste1g02969 1505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 262 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02969 Pste-Chr1 13006777 13013350 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02969 171 254 PHD Transcription Factor Family AT5G36670 35.632 1.08e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pste1g02969 Plus-3 2.4e-23 No_clan