LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02963	TCTCTTCTCTCTTTCTCTCTCTTCAAAGTCTTCATTGATCTTCATTTCAATTTGTCAAATAGTTAGAGAGAGACTGCGTGTGAGTGTGTCTTCAAACTCTTCAGTTCAGTTCAGAAATAGTTAGAAAGAGAGAGAGAGCGCGTGTTTTTGTTGTACTTTGTTTTTTTCCCTTCAACTTGGGAACCAAGGTTGAGACTTTCAATCTTCTTCTTTGCAATAGCTGTGAAAAGTCATCATGGTTATGCTATTATTGCCTATTGTTGTTGTCATGCGACTAATGGAATGAAGTTATAGGAGAGTTTATAGAAGGATGAGAAGAAACCCACATGATGTTTGGGTTGCATATGGTTCTATTCTATTGAGGAAGCAATGTAGAACCAGGTTATTGCTACATTGGATGGATAAGAACTATGGTTTCGTTTTGAGACGTGGGAAGTGGGGAATGGTGTGAGATTGGTTTCTACTTGCTAGTTATTGGTTTTTGTTGGTTTTCTTGCTTTCTGTTTGCGTTGTTTTGGGGTTTGAGGAATTGAATATTGCTGGATCTTGAGCAATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGTGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCTAGGCAGACCGAACGGTGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTGTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACCCAATTACTGTTGGCAGTAGAATACCTGCATTCGAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTAACAAAGGATCAGGATATTCGCCTAGGAGATTTTGGGCTTGCTAAGACTCTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTAGGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCTTCCATTGGTCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGTATGCTAAGAAAAAATCCGGAGCATCGGCCAACAGTAAGCCCCTCTTGAGATTACATTTATTTCCAATGTGGAAATGGTTTACTATCATTGCTTTTCCTAAATATTCCCACTTCATATTTTCACAGGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTATGTGGATCAATATCGTCCATCTTTCAGTCCTCCAACAACCTGTTCTACAGAAAAACCAATTTCTACTGTCAATGAACTTAGAAAAAATATGGCTGAAAGTCAAAATAGTAATAGTTCAAGTAGTGACAAAGATAGTCTGATGTCAAATGAGAAAAACATCACAGCAGTAGGACCAAAGTGTGATAACAAAGCCACCAAAACGGATATAACATCAATGGATGATGATGGCTCAGAGGACGAAAGTGGCTCTAGTAATGCCAATGCCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTCATAATGAAAACCATTCTAATATTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAGGAAGGAAAGGTTAGAGAAGCAACTTCTCCAATGAGAGGCAACTGCATAAAGCCTGGTGGTGTATCAGCTCAGAAAATAAGTACAGAGACATTGTCTAAATTGCCTAAGCCTACCTTTATTGCTCCTAGTTTGAAGGCTAATTTAGAATCACCAACTGTTGCAATTGCAAGGGCAACCCCTGACTCTGCAAAAAAAATGCATGGATCGCATAATTCAAAGCTTCAGATGACAGAAGCCTCACCAAAAGTGAAAGCTAGACTTGATTTGACTCCACCATCTGCGCTTGTCAAACAAGTAGAAGGAGATGGAGTTCCTCCCAAGCCAAGGCAAAGGACTCCCCCTACCTTGCTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGTAGCAAATGATACTGTGAAGCTAGGCACAAATAAAATGATCCAGGAATCTGAGATGAGCCATTGTCCGCTGGCCAATGGCAATGTACCACATATTTCTAGACAGGTTACTGGAGAGCCTCAGAAAACTTTTGAAAGAAGTTCCAAAGGAATGCAAACTGACAGTAGCAATTCTGCCTCATCTTCTGTTTCTATCCAAGGATGCGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAACAGACAGTTCCTGATCAGGTGAGTGTAACCCACATTGTAGGTCTGGAATCATGTCCTGACCGCAGCACACCTACAACTTGTGCCCATTGTAAGATGGTTGAAAAAGTGCCTATAGAAACATGTGAGGTTACCCCGAATTTTCAGAATACTATTAGTAGTAATGAGAAAGCGAGTTCCAGTTTAATTCAAGATCAGCATGTGGAGGATTCTAAGATAACACTTGCTTCAGAAAGTAATCTTGTCATAAACCAGACAACTATATCTACTACCTCCATCTGTGACAATAGACCTGTAGACCCATCTGCTGTAGACACTAAAGAAATCAAAGATTTTCAAGATATTTCCAAGGAATTGCCTTCAACCAAGTCTCCCAAACTTGCATCCCCAAGTTCTGGAGAAATGTCTGTTCATGTAGAAATTAGTCCAGTAAGTGAGCCTGATATTGTTAGCCAGCCAAATCTTGGGTGTAAATCCCCTGGTGATGACAAATTCACCGTGAGGGAGCGACTGTCACCAGTGGTTGACACTGTTCCCGTGGTTACCACTACTAAATTATCAAGTAAGAAAGTTTTGCAAGAGAAAGGAACTGTGTTGCAGAATCCAGCATCAGAAAGGCCTGATACTGGCCATCTTCCTCCAGCATTTGATGATGTTATCCATGTCATACGCCATAGTAGTTACCGTGTTGGAAGTGAGCAGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGACGTTGGTAAGTTTATCAATGTTGTGAGGGATGATTTAGAAATGAGGAATATAACCTCACCTTTGACCCTCAAATCTTCAAGTTGCTCTGATGTTACAAGCTTGAAATCAAATATTTCTGATTCGTTGGAAATGAAGAACTTGAACTCGCCTCCCATTCTTAAATCTTCAAGTTTCTCCGATGCTTCGAGCTTGAAATCAAGCATTTCTGATCTTCCTGGTCTTAAGGAACAAGATGTGAGTAACCCCCCTCCTCTAGTTTCAGAGCCTGATTCTGCTGAGCTCAGTAAAAGTAACACCCCTATGAATGAAGACAAATTACCAGCAAAGGAAACATTGGATGTGACATCGTTCAGGCAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTTGTTCTAAAACCCTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCGGAGGATAGTGGGGGACGCTCTTCA	3694	0.4115	MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDIRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGYGRVDKQDKPFFHWSFASMLFPFLENTDKGYAKKKSGASANSKPLLRLHLFPMWKWFTIIAFPKYSHFIFSQASEVLKHPYLQPYVDQYRPSFSPPTTCSTEKPISTVNELRKNMAESQNSNSSSSDKDSLMSNEKNITAVGPKCDNKATKTDITSMDDDGSEDESGSSNANAKTAEQEVMKPSHNENHSNIESKQPKTIRNIMMALKEGKVREATSPMRGNCIKPGGVSAQKISTETLSKLPKPTFIAPSLKANLESPTVAIARATPDSAKKMHGSHNSKLQMTEASPKVKARLDLTPPSALVKQVEGDGVPPKPRQRTPPTLLRRPSFSGRMRLAGIDVPNVANDTVKLGTNKMIQESEMSHCPLANGNVPHISRQVTGEPQKTFERSSKGMQTDSSNSASSSVSIQGCELADDATTFIDMREQTVPDQVSVTHIVGLESCPDRSTPTTCAHCKMVEKVPIETCEVTPNFQNTISSNEKASSSLIQDQHVEDSKITLASESNLVINQTTISTTSICDNRPVDPSAVDTKEIKDFQDISKELPSTKSPKLASPSSGEMSVHVEISPVSEPDIVSQPNLGCKSPGDDKFTVRERLSPVVDTVPVVTTTKLSSKKVLQEKGTVLQNPASERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVTSLKSNISDSLEMKNLNSPPILKSSSFSDASSLKSSISDLPGLKEQDVSNPPPLVSEPDSAELSKSNTPMNEDKLPAKETLDVTSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEDSGGRSS	1047

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	499	522	-	-
	Pste1g02963	1047	Pfam	Protein kinase domain	8	194	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02963	1047	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	736	752	-	-
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	567	600	-	-
	Pste1g02963	1047	SMART	serkin_6	8	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02963	1047	Coils	Coil	984	1010	-	-
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	732	752	-	-
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	565	600	-	-
	Pste1g02963	1047	Gene3D	Transferase(Phosphotransferase) domain 1	84	199	-	-
	Pste1g02963	1047	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Pste1g02963	1047	ProSiteProfiles	Protein kinase domain profile.	8	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02963	1047	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	374	388	-	-
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	332	389	-	-
	Pste1g02963	1047	FunFam	Serine/threonine-protein kinase Nek2	5	87	-	-
	Pste1g02963	1047	MobiDBLite	consensus disorder prediction	935	971	-	-
	Pste1g02963	1047	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	5	194	-	-
	Pste1g02963	1047	SUPERFAMILY	Protein kinase-like (PK-like)	4	315	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02963	Pste-Chr1	12954298	12960923	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02963	9	194	MAP Kinase Kinase Gene Family	AT4G26070	35.638	2.80e-27	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Pste1g02963		Pkinase	2.3e-51	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03004	3	22844405	22852117	Pste1g02963	1	12954298	12960923	PCT