Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02962 CACCGAGTCATATTTCATTTCCAATTCCGTGTGCCCACTCACTATATCAGACCGACCACGCTTAAATCCCAATTCCCAATTCCCAATTCCTCCGACTAGGTTTCTGTCTCTCGCGAACTCCACTCGCTTTAATTCATGTTTTTCAATTCTTAATTGATTCTCTTCTATTTGATTCTCTGTTCGATTCGATTGTTCTATGGAACCGCAGTTTCAGCCGCCGGAACCTGCCCCAGATGTCGCGAACGGTGACGGCGGGATTTCGGAGAAGTCACATGTCACGGTGGTTCGCCATGTTGCTATGGCTCAGGCAAACAGAGAGGAGGTTCGCGATGTTATTATGTCTGAGTCAAACGAAGGTTGCTGCGCCACCGCTTTGAAACGAAAGCGTGGTCGTCCGGCAAAGGCAGGGCGCCTACCGAAAGGGATTTCACCGCCACAGAGGCAGAAAAAGGACGAGGAGGATGTTTGCTTCATATGCTTCGATGGAGGAAACCTCGTTCTCTGTGATCGCCGGGGATGCCCTAAAGCGTATCATCCCTCGTGTATCAAGCGAGACGAAGCTTTTTTTCGTTCCAAGGCCAAATGGAATTGTGGCTGGCATATATGCAGCGCTTGTGGGAAAGGATCACATTATATGTGCTATACTTGTACGTATTCCTTGTGCAAGGGTTGTACAAAAACAGCTGATTTTGTCTCTGTCAGAGAAAATAAAGGTTTATGTGGAATATGCAAGAAGACTATTATGCTGATAGAGAATTGTGCACAGGGCAATAAGGCAGTGTGTGAGGTGGATTTTGATGACAAAACCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACATATTTGAAGGAGAAGCTATCTTTGACATTTGATGAGATCCTTCAAGCTAAAAACCCATGCAAAGGAGTTGCAAGGTTAGAAGCATCTGGGGTTGCGGCCGATGTTTCATCATTGCTTCTCTCTCCAAAGATGGAGCTGCCAATGAGCTATTTTACGAATGATAAACCATGGCATTATCAGGATCCAACTGGGAAGGTTCAAGGACCTTTCTCTTTGTTGCAGCTGTATAAGTGGAATGCAAGTGGATATTTTCCTCCAGATCTCAGAATTTGGAGGATAGATGAGACACAAGATAACTCTACATTACTAACTGATGTACTGAGTGGGAAGTGTACAATAAACGTGCCATTGACAAACAACAGCCAACAGCTGTCTTTCGGAACCAATAGTACGTTGGAAAATAGAGAAAATAGTCAGGACGGTGGTGAGAACAATGTGACATGGAATAGAAATTCTGTAAAGCACCAAATTGTTGTGCAGTGTGGGGAGCAAAAAGTGGCTGATACTTGTACACAATCTAATGGCAAGGATGAATCTGTCAAGAGCAATGGTTGGAACTCTCAGTCTCCAGGTTGGACTATACAAGCAGAAGCAAATAACAATGAGGGCCAAAGTGGAAATTCTGAAAGGAGGGAGCAATCACCGAAATATGAAATTTCTTGTCATGATGTCCCTCATGTATACCCTTCTCTCCCTTCAACTGCATTGTGTGAAAAACTGAACGAGAATCCATCTGATAAACTAACAGAAGTTCAAAAGATTGAGGTAAAGTCAGAAGATGATGGAAATTTTGACTTGAACAAAGTTTCTGAGGGTCAAAGTAACAGTGGGCAAAGCTGTCAGAAACAATCAGACAGTGAAGAGAATTCAGGACTGTCTTCTGGTCAGAACTGGAGATGCCCTAATGAAACTAATCCAGCATGTAACAATAACATATCTACATGGCTGTCAATCTTTGGTGAACCAAATGATTTTGATGAGTCAGTTTCAGATCTATTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGTGGTGGTGGTGGTGTTGTTGTTGGTGTCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAGTTGACTGACGGTTCTATAAATGATTGTCTTAGTTTTGCAGATGCGCTTAGCCCAATGCTTGACGCAGGTAAAGGTGATGCACTAAGCTCCTCAGGTGATTTACACTTACCCTCTCAAACCACAACACCAGATGAACCATTTAAGCAAACAGATGTGTATAATCATCCTCAAAAAATATCTGGGGAGCATTCATCAAAGAGTACAGAAGTTGAGTCTACTTTCTCTAAGATTAGCTGGGATCCAACCATTCAATATTCCTGGGATCCTAAATGTAAGTTGTTTCTCAACTTTCTTAGTTTTGCATAACTATTTTAGTATTTTACCAAGTCGCGATCATATTTGGTATAATTTGGATATTTTGTCAGCATTCATAATTCACTGAATTTCGATATTTGTTGAGAAGGTTCTTTGTATTTGCAGGTTGACATGACAGATTATGTTGAAGACAAGACCATTTTTCTTATCTTTAGGCTACAAAGATCTTAGACAAACTTAAATTGGATAAATATTATCTTGTTTATAACAGCATTCTTTGCAAACAGTAACCTCTTGCCGTCCTTCACTGTTTGTTTGTTGATGAAGAAAAGAAAGAGCGTTAGGGTTCTTGGTAGTCTTGTTATTCTGCTATGTAATCTCATTGAATTTTAAATGTGAAGAAACTTTCTTAGGTTTTATTATGGGACAGATATGTAGTTGGCTTTCCTTCTAAATTACAAAGAAATTAATAATTTAGTTTATATCTTTTCTTCCAAATTACAGATCCGATCCTGAAAAATGAGAAATTACGCATGAGCGTGGCGAAGCATGAGGAAACATTGGTTACATTGGTGGAGGCCTGCAGTGATTCTGCAGTGCAAATATAGTTCCACTAAATTGGATAAAGTGGTGAAAGAGTAATGAACCGTCTAGATTGAGTTATGCAATGCTGACAAATATGAATAAAAATCTCCTCGATTGAATTAGGC 2904 0.4081 MEPQFQPPEPAPDVANGDGGISEKSHVTVVRHVAMAQANREEVRDVIMSESNEGCCATALKRKRGRPAKAGRLPKGISPPQRQKKDEEDVCFICFDGGNLVLCDRRGCPKAYHPSCIKRDEAFFRSKAKWNCGWHICSACGKGSHYMCYTCTYSLCKGCTKTADFVSVRENKGLCGICKKTIMLIENCAQGNKAVCEVDFDDKTSWEYLFKVYWTYLKEKLSLTFDEILQAKNPCKGVARLEASGVAADVSSLLLSPKMELPMSYFTNDKPWHYQDPTGKVQGPFSLLQLYKWNASGYFPPDLRIWRIDETQDNSTLLTDVLSGKCTINVPLTNNSQQLSFGTNSTLENRENSQDGGENNVTWNRNSVKHQIVVQCGEQKVADTCTQSNGKDESVKSNGWNSQSPGWTIQAEANNNEGQSGNSERREQSPKYEISCHDVPHVYPSLPSTALCEKLNENPSDKLTEVQKIEVKSEDDGNFDLNKVSEGQSNSGQSCQKQSDSEENSGLSSGQNWRCPNETNPACNNNISTWLSIFGEPNDFDESVSDLLAEVEAMESLGGGGGGVVVGVLESPTSIMKCGEELTDGSINDCLSFADALSPMLDAGKGDALSSSGDLHLPSQTTTPDEPFKQTDVYNHPQKISGEHSSKSTEVESTFSKISWDPTIQYSWDPKCKLFLNFLSFA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02962 682 SUPERFAMILY GYF domain 263 322 IPR035445 -
Pste1g02962 682 ProSiteProfiles Zinc finger PHD-type profile. 88 154 IPR019787 -
Pste1g02962 682 MobiDBLite consensus disorder prediction 384 423 - -
Pste1g02962 682 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 524 661 - -
Pste1g02962 682 MobiDBLite consensus disorder prediction 384 430 - -
Pste1g02962 682 CDD PHD5_NSD 90 135 - -
Pste1g02962 682 Gene3D - 271 326 IPR035445 -
Pste1g02962 682 CDD GYF 272 324 IPR003169 GO:0005515
Pste1g02962 682 ProSiteProfiles GYF domain profile. 269 323 IPR003169 GO:0005515
Pste1g02962 682 SMART PHD_3 90 136 IPR001965 -
Pste1g02962 682 ProSitePatterns Zinc finger PHD-type signature. 91 151 IPR019786 -
Pste1g02962 682 MobiDBLite consensus disorder prediction 613 631 - -
Pste1g02962 682 MobiDBLite consensus disorder prediction 1 21 - -
Pste1g02962 682 SMART gyf_5 270 325 IPR003169 GO:0005515
Pste1g02962 682 Pfam GYF domain 272 312 IPR003169 GO:0005515
Pste1g02962 682 MobiDBLite consensus disorder prediction 337 363 - -
Pste1g02962 682 FunFam Zinc finger CCCH domain-containing protein 19 80 180 - -
Pste1g02962 682 MobiDBLite consensus disorder prediction 608 631 - -
Pste1g02962 682 SUPERFAMILY FYVE/PHD zinc finger 63 136 IPR011011 -
Pste1g02962 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 180 IPR013083 -
Pste1g02962 682 MobiDBLite consensus disorder prediction 482 516 - -
Pste1g02962 682 MobiDBLite consensus disorder prediction 470 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02962 Pste-Chr1 12940651 12944953 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02962 86 134 PHD Transcription Factor Family AT2G36720 40.816 9.09e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02962 1 12940651 12944953 Pste1g02962 1 12940651 12944953 ECH