Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02956 TTTTTGGAGGAAGAGAGAAAATAATAATATAATAGATTTTATTTGGGAATTATTGTAAGTGCTTCCCTCCACATCTATATCCGAACCAAATTCCCTCCTTCCACCTCTCTCACCTTCTCTTTCTCTTTCCCTCGTTTTCTGCTCTCTTTCTCTCTCCCGCTTTTTTGTTTTCCGACTCAGATCTCTCCTCTTTCCTCTCATTCCCGATTCCCCCAATTCCCATCCCTCCGATCCCCATCGCCGGCCGGCGGATGTCGGGCCCCCGCGCTCCTCCCGCCTCCGCCGCCGCCGCTGCCTCCTCCAACCCCTCCGACCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCCTCCATGAAACCCCCCTTTGTCGCCGCCGGTGACTACCACCGCTTCGCCCCCGACCACCGCCGCACCCTCCACCAGGACGCCGAGGCCATCGTCGTCAAGACTCCCCAATTGAAGCGGAAGAGTGAAGTGGCTGATTTTGAAGCTGATTCTAGTGATAGGATGACTCCTGGACCCTCTGAGGCAGCTAATAGTCCTTTTCAGACACCTGTGTCAGGAAAGACGGGGAAGGGAGGCAAATCCTCTAGATTGACTAAATGCAACAGACTTGGAATTCAAACCCCAGGCTCGAATATTGGTTCTCCTTCGGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAAAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAATCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGTGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGAGGAACGACGGTTAGATGACCAAATAAGGGAGATGCAAGAAAGATTGCGAGATCTTAGTGAAGATGAAAACAATGAGAAGATGCTTTTTGTTACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCCGATGAGGCTGTCGATTATCCGCAGAGGAGATATAGGATAGTCCTTAGAAGCACAATGGGCCCAATCGATCTTTACCTCATGATAATGCCAAATGAGGCAATGATGCTGGACAATTGCAACATTTATAAAGTCAAGATTCCTGACCCTCCCTTCTTTCTCTGCCATTTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGTTGATGTTGCACCCAAACCTCCATCCAGTCCAGCTATTAACAAGCATCAATCAACAGTGGTCCCGGAGGATAGAGATAGAGGGAAGGACATGGAAATTCAGGGACAAGAAGTTCCCGGGCATAGTTCTGATTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGAAGTTAGCATAACTGATATGTGGAGAACAGAACCTGGAGTCGAGTGGAATGAACTGGATCCCCTTCAAGAAGATTATTGTATGACTCGCGAGAACACTACGACCCCAAGTCATCCTTCAAATGTTGGTGAGGTGGCTTCTGCATCTAAACCCACTGGAGGTTGA 1745 0.4625 MSGPRAPPASAAAAASSNPSDQIMHSMKRQLPFSSMKPPFVAAGDYHRFAPDHRRTLHQDAEAIVVKTPQLKRKSEVADFEADSSDRMTPGPSEAANSPFQTPVSGKTGKGGKSSRLTKCNRLGIQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMEERRLDDQIREMQERLRDLSEDENNEKMLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDLYLMIMPNEAMMLDNCNIYKVKIPDPPFFLCHFSQFEEKFEEINGVDVAPKPPSSPAINKHQSTVVPEDRDRGKDMEIQGQEVPGHSSDFTTSQDFVSGIMKIVPSDVASEADYWLLSDAEVSITDMWRTEPGVEWNELDPLQEDYCMTRENTTTPSHPSNVGEVASASKPTGG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02956 497 Gene3D - 141 214 IPR036388 -
Pste1g02956 497 MobiDBLite consensus disorder prediction 75 117 - -
Pste1g02956 497 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Pste1g02956 497 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Pste1g02956 497 MobiDBLite consensus disorder prediction 90 117 - -
Pste1g02956 497 Coils Coil 225 266 - -
Pste1g02956 497 CDD E2F_DD 223 326 IPR032198 GO:0046983
Pste1g02956 497 MobiDBLite consensus disorder prediction 473 497 - -
Pste1g02956 497 Coils Coil 163 183 - -
Pste1g02956 497 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Pste1g02956 497 Gene3D - 219 328 - -
Pste1g02956 497 FunFam E2F transcription factor 1 141 214 - -
Pste1g02956 497 PANTHER TRANSCRIPTION FACTOR E2F 86 462 IPR015633 GO:0000978|GO:0006357
Pste1g02956 497 MobiDBLite consensus disorder prediction 13 28 - -
Pste1g02956 497 MobiDBLite consensus disorder prediction 372 395 - -
Pste1g02956 497 MobiDBLite consensus disorder prediction 1 28 - -
Pste1g02956 497 SUPERFAMILY E2F-DP heterodimerization region 226 326 IPR037241 -
Pste1g02956 497 Pfam E2F transcription factor CC-MB domain 228 327 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02956 Pste-Chr1 12877278 12882300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02956 22 496 E2F-DP Transcription Factor Family AT5G22220 53.479 3.08e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste1g02956 E2F_CC-MB 3.9e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02956 1 12877278 12882300 Pste1g02956 1 12877278 12882300 ECH