Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02944 AAACCCTCTTCACTGCTCTCCACCTTTTTCTTTTTTGTGTGTATGAGTTTCTATTCACTTTGGCTTTATTGTTTGCTTTGCTCTCCCCTCTATTAATATCGCTGCTTGGAAAGGGAAGCAAAAGAAGAGAAGATCCATAGCAGCAGTAGTAGCTAAGCTAGTGAGTGATCGATCTCGAGATGGGTCGTGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTATTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTCTCACTCATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTTACCACAAAAAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTAAAGAAACTGAAAGATATAAACAACAAACTCAGGAGACAGATCAGGCATAGGATAGGTGAGGGTTTGGACTTGGACGACCTGAGCTTCCAGCAACTGCGAACTCTTGAAGAGGATATGGTTTCTTCCATTGGGAAAATACGCGAGCGAAAGTTCCACGTGATAAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCCTGGAGCAGATGAATGGAAATCTGCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGATGAGGAATCAGCAGTTGCACTGGCCAACGGCGCCTCCACCCTGTATGCGTTCTGTCAGCACCATACTCATCTGAATCTTCCCTCCCACCATGGACAACAACCCTTTAAAACTGGTGATCTGCGCCTTGCTTGAGTCCAACCTTCAATTATTCACCACTTAATGTAAATTAAGTAGCTACCACTCACCACTTGCTATTTATGCTTTCTATTATCCTATATATTCCACCCAAACCTCTCTATCCACATAGAGAAATTACCTACCTGCCTAGAGTGTGCTTTGAAAAACACAAGCACTGTATTTTATTTCTTATTTTAAATTTACATTGTGTGACTGTGTTATATTAATTGCTCCGTTGCTTACCTCCTACAATCATACATTTAATTAGATAAAGCAAAATCTGGTGTAATAGTTAATTATCAACAAGTCAAGTCTTAGTACAATTCTTC 1189 0.4054 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDDLSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPSHHGQQPFKTGDLRLA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02944 231 Coils Coil 85 105 - -
Pste1g02944 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste1g02944 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste1g02944 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste1g02944 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste1g02944 231 Gene3D - 14 104 IPR036879 GO:0003677|GO:0046983
Pste1g02944 231 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g02944 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pste1g02944 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Pste1g02944 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste1g02944 231 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pste1g02944 231 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g02944 231 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pste1g02944 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02944 Pste-Chr1 12771488 12773811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02944 1 228 MADS-box Gene Family AT3G54340 47.807 1.39e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste1g02944 K-box 4.8e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02944 1 12771488 12773811 Pste1g02944 1 12771488 12773811 ECH