Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02920 CAAACATAAAATTAAATAAGTGTTAAAGTACTAGTTCCAAATGACAAGCTTAAACATTATTATGGAAGATCATCCACCCGGGTTTCGCTTCTTCCCAACAGAAGAAGAGCTTGTTGGTTTCTACCTACACAGGAAGCTGGAAGGACACACAAATGCCACTGCCATAGACAGAGTTATCCCTGTTATTGACATCAATGGTGTTGAGCCGTGGAATCTTCCAACATTTGCTGGGGAGCTTTGTCGTGGGGACACCGAGCAATGGTTTTTCTTTTCGCCAGGCCAAGAAAGAGAATCCAGGGGAGGCAGACCCAGCAGAACCACAGCTTGTGGGTATTGGAAGGCCACAGGTTCTCCTGGCTATGTTTACTCTTCTGACAACAAAGTCATTGGGGTCAAAAAATCCATGGTTTTCTACAACGGCAAAGCCCCCATGGGAACAAAAACCAAATGGAAGATGAATGAGTACAGAGCCATCTTCCAACTCTCTAACCAATCCACCCCTCAGTTGAGATGTGAATTCAGCTTGTGTCGGGTATATGTGGTATCGGGAAGCTTTCGAGCATTTGATCGACGCCCATTAGAGAGGGAAGGAGCAGTGTCGCGGGTTCATAGAAATCGGAACAAGTTTGCTGTGACACGTGCTAAGCAAACTGCAAAAGTGGATTCTGAAACTTCTCACTTGGGGGGACTCCATGCTCCTCACTCTCTGCCCCCAGACTCAAGCAGCACAAATTGGAATGTAGATAATAATAACAATGATCAGGTCCAACTCCGAGAACCGCTTTGGGAATTGGAATGGGAACAATTTAATGACCTCTAACTCAAAAACCCGTTAAAACATCACGCCCATCGCCACTCAAACAGATTCATATAGATATCAAACAGAGTAACCGTTATAGTAATCTTTTCTTTTTGTTTTGAATAGGATTATGCCCAACGAATAGGGATTCTTGTTATAAATTTAACCTATTAGTTTGCAGATAGCTTTTACGTAGACGACACTTACCAGTATTTTTTTTAATACCAAGATTCAAGTCCATATCTTTTCTAAATTGAATATCAAATCCTGTATTCTGTTTCGGTCCTTATGTTGTTCGGACTTTCTCTTTAACGTGTATACACAGTGAGTCGATAATATAACAATCAAT 1148 0.4181 MTSLNIIMEDHPPGFRFFPTEEELVGFYLHRKLEGHTNATAIDRVIPVIDINGVEPWNLPTFAGELCRGDTEQWFFFSPGQERESRGGRPSRTTACGYWKATGSPGYVYSSDNKVIGVKKSMVFYNGKAPMGTKTKWKMNEYRAIFQLSNQSTPQLRCEFSLCRVYVVSGSFRAFDRRPLEREGAVSRVHRNRNKFAVTRAKQTAKVDSETSHLGGLHAPHSLPPDSSSTNWNVDNNNNDQVQLREPLWELEWEQFNDL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02920 259 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 226 - -
Pste1g02920 259 ProSiteProfiles NAC domain profile. 11 168 IPR003441 GO:0003677|GO:0006355
Pste1g02920 259 MobiDBLite consensus disorder prediction 199 238 - -
Pste1g02920 259 SUPERFAMILY NAC domain 4 167 IPR036093 GO:0003677|GO:0006355
Pste1g02920 259 MobiDBLite consensus disorder prediction 223 238 - -
Pste1g02920 259 Gene3D NAC domain 20 171 IPR036093 GO:0003677|GO:0006355
Pste1g02920 259 Pfam No apical meristem (NAM) protein 12 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02920 Pste-Chr1 12620178 12621533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02920 9 257 NAC Transcription Factor Family AT3G44350 53.200 1.27e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g02920 NAM 1.8e-29 No_clan