Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02908 CAAAACTTTAATTAACGGCGCCACCAAAGTTGGCGTTTGCTAGCTTCAGTGAGAAACAGCCTTCTAATTTCTAGGGTTCGTTATTCCTATCCAATTTAAAAGCTCTCCTTCCAAGTTTGCACCAATTTCGTTTTTCGCACCACAAATTTTCGATCCATTTTGACATCGTTGTCGTGCTCCCTTACGTTAAGGTACTCTCCTTTCTCTCTCACCCTGAAATTCTGTACGAAGGCAAGTATGACAGAAAAATTTTATAATCGCTTAATTTTTTTTTTTAATTTGGGATTTCTGTGAAATTTGATGTGTTGTGGTTAAGGTTGCGTTAGTGATTAGCTGGTAGAAATGTGTAATGAACCCTATCTTAGTGCGTATCTGTAAATTTGTGGCAGGAAGGTGCACAGATTGGTACGTTTTGTTTGGAAACTGCTATTATTTTTCTGAGATTGGACACTTCATGATTCTCCTTTTTGTTCTGCCTTCTCGTTCCTTTGATGCCTAATTTTTTGTTCACCTTGCATTTTAGTGGAAAATTTTCATATTTACATTTCATGTTGTTCCTGTAAATCTGGATTTTCATTGCCCCTCGTTTGGCTTTGTGAAATATAAGAGCTTGTGCTCGCCAACATGCCGTTTGAACTCGGGTTCCTTTCACCGCCTTCGTTAATCTCTTTTTATTGATTTTTTGACTTGCCTGTCAATGCTGCTGATTATGTTATCATTATCCTTTAATGAACGTCTATCGTGTTGCGGCCGTATAAGTCTTGTGTCATTGCACGGCTTCCACTGAGATTCATTCGCTGCAGCCCCTTGTTTGGCCTTTCTTTTTGTTTCCTCCTTTCGATATGTGTATACTTCTTCCCAGGAATTCTTCTGGCCTCTGTGCCTTCTTCACAGTTGCCTCACGAGCTTGTTTCATTAGTTTCATAAGATGCCTCGGGGAAAAGCAAATTCTTCATCTGCTGCTAAGCCATCTAAGCCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGGAAATGATCCAGAGGAAGCAATGGAAGATGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAGGTGGAAGAAGAGGAGGAAGATCCGGAGGAGGTAGAAGTAGAAGAAGAGGAAGAGGAGGATGAGGAGGACGAGGAGGAGGAAGAAGAAGATGTTGAAGAAGTGGAAGAAGATGATACCATGCTAAATCATAGCAGTGATGAAGTAAAGGTGGAAGATGAGGATGAGAAGAAAAAACATGCCGAACTCCTTTGTCTTCCTCCTCATGGGTCCGAAGTTTACATTGGTGGCATTCCTCACGCCTCAAATGAGGAGTTGAGATCTTTTTGTGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGGATTCTTCAGAGAACAAAGGCTTTGGTTTTGTGACCTTTAGAAGTGTGGAATTGGCTTCTAAAGCCATTGAAGAACTGAATAATACAGAATTTATGGGTAAAAAAATAAAATGTTCGACATCTCAAGTCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGGTGGGGTGTAGAAGATCTAAGGAAGATTGTAACCGAGGTTGGACCTGGAGTTACTAGTGTGGAACTAGTCAAGGATATGAAGAACACCAACAATAATCGTGGCTTTGCTTTTGTTGATTATTATAATCATGCATGTGCTGAGTATTCAAGGCAAAAGATGATGATCCCCACATTTAAGCTAGATGAGAATGCTCCTACAGTGAGCTGGGCTGATCCTAAAAGTGCTGATTCTTCTGCTGCATCTCAGGATGATGTTGGAGTACTGAAGATTGCAGCTCCAGCAGAGGGGGACATGGTTGCTAATGCTCTGGTGTGGTGGGCCAGATTGGAGCTACTAGGGGTTACTCTTGGGAGATCAAAATCGGTAGAATCGTCGAGCGGAATTGTGAAATCGCAGGAACGTCACGCGTTGCTGAGCCTCGTCGCGCTATGTTGCCGGTTTGGGTTTCAAAAACCCATTGCCATTATGCACGAGTGCTTTGTCTCATGTTCCAACTTCCAAATGCTCCTTCTCCATTCTCCATTACGGAACTCTTTCTCCACTCACGAGTCATCTTCTTTGCACTTTTGTCTTCTTCGCACGTTCATCTTTTTTGCTTCGTCTCCACTCGTGGCTCATGTAGATTGTAAAGACGCATGTGGCTCACTTGTAAAGGCAATATATGTGAAGAATCTGCCAAAGAATGTAACTCAGGAGCAGTTGAAGAAGCTTTTCGAACGCCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAATCTGGACAGGAAAAAAATAGAATTGGATTTGTACATTTTGCAGAGAGGTCAAACGCTATGAAAGCTCTGAAAAACACTGAAAGATACGAATTGGAAGGTCAAATTTTAGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGTCAGGACCAGGACTGCTTCCAAGCTATCCACCACATGTTGGTTATGGTTTGGTTGGAGGTGCCTATGGTGCACTTGGTGGAGGATATCCTGCCCCAGGTCTTGCACAGCCATTGCTATATGGAGGAGGCCAACCTCCAGCAGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGGATGCAACCTCAAGCCCCACCCTCACATCATAGAGGTGGCAGAAGTGGTGGCAACAGGAGTTCAGGTAAAGGAAGGCACAACAATGATGGTGGCCAAGGGCGCAGATACCGCCCTTATTAGCTAGCTGGTCTGATATATATAGTATCACCTCCTCCTCTCAAATGTACTTGGGGCTTTTCAAGCTCATTTAATGCATCAAAATGTGCTGCATATTTGTTTTTTTATTAAAAATTATTCTGTAGATTCAGTCTTAATTAAAAATACATGACAGGGCGTTTTTATGCATAGGTTAAATTCTTATATGTTGATAAATCC 3043 0.4243 MPRGKANSSSAAKPSKPEKPVESDEKVDFEEGNDPEEAMEDEIEYEEVEEEEEVEEIEEEVEEVEEEEEDPEEVEVEEEEEEDEEDEEEEEEDVEEVEEDDTMLNHSSDEVKVEDEDEKKKHAELLCLPPHGSEVYIGGIPHASNEELRSFCERIGEVAEVRVMKGKDSSENKGFGFVTFRSVELASKAIEELNNTEFMGKKIKCSTSQVKHRLFIGNVPRRWGVEDLRKIVTEVGPGVTSVELVKDMKNTNNNRGFAFVDYYNHACAEYSRQKMMIPTFKLDENAPTVSWADPKSADSSAASQDDVGVLKIAAPAEGDMVANALVWWARLELLGVTLGRSKSVESSSGIVKSQERHALLSLVALCCRFGFQKPIAIMHECFVSCSNFQMLLLHSPLRNSFSTHESSSLHFCLLRTFIFFASSPLVAHVDCKDACGSLVKAIYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQILECSLAKPQADQKSGGSNTQKSGPGLLPSYPPHVGYGLVGGAYGALGGGYPAPGLAQPLLYGGGQPPAGMAMMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRSGGNRSSGKGRHNNDGGQGRRYRPY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02908 639 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 630 - -
Pste1g02908 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 210 IPR000504 GO:0003723
Pste1g02908 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 442 509 IPR000504 GO:0003723
Pste1g02908 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Pste1g02908 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Pste1g02908 639 CDD RRM_SF 135 206 - -
Pste1g02908 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 294 IPR000504 GO:0003723
Pste1g02908 639 MobiDBLite consensus disorder prediction 27 103 - -
Pste1g02908 639 SMART rrm1_1 441 514 IPR000504 GO:0003723
Pste1g02908 639 SMART rrm1_1 213 290 IPR000504 GO:0003723
Pste1g02908 639 SMART rrm1_1 134 206 IPR000504 GO:0003723
Pste1g02908 639 Gene3D - 436 553 IPR012677 -
Pste1g02908 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 440 518 IPR000504 GO:0003723
Pste1g02908 639 MobiDBLite consensus disorder prediction 520 535 - -
Pste1g02908 639 MobiDBLite consensus disorder prediction 598 639 - -
Pste1g02908 639 SUPERFAMILY RNA-binding domain, RBD 441 535 IPR035979 GO:0003676
Pste1g02908 639 Coils Coil 38 100 - -
Pste1g02908 639 MobiDBLite consensus disorder prediction 1 114 - -
Pste1g02908 639 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 213 293 - -
Pste1g02908 639 Gene3D - 5 212 IPR012677 -
Pste1g02908 639 Gene3D - 213 293 IPR012677 -
Pste1g02908 639 SUPERFAMILY RNA-binding domain, RBD 130 296 IPR035979 GO:0003676
Pste1g02908 639 MobiDBLite consensus disorder prediction 517 538 - -
Pste1g02908 639 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 430 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02908 Pste-Chr1 12495574 12507569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02908 442 626 Eukaryotic Initiation Factors Gene Family AT2G23350 32.461 2.71e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02908 1 12495574 12507569 Pste1g02908 1 12495574 12507569 ECH