Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02902 ATTCCATGTGTTACTAGTTCCCCTCCAGCTCTCATATATAACTACCTGTCTAAGAAGGTTTTGCACTATGAGAAATGTGCAGTGGAGAAAACAGACAAGCACCACAAGTTGACAGAGGTTCACTTATATATTACTATCAAGTTCTATAAATACTTGCAAATAGAGCATCATCGAGTTTCACCTATCGGAGGTAGCAAGGGCATATATAGAATAGAAGCCACCAGGTTGAATATGTACACTCAAGGAAAGAACATTCATTCTTCTTCCAGAATGACAATCCCTTCTGAGAGGCATATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCCAAACCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTGGGTGGAGCTGACAAGGCAACTCCAAAAACTGTAATGAAGCTCATGGGGATTCAAGGGCTTACTTTGTATCATCTGAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAGCCTGCATGGACACAGTAACAATGCTTCGCACAAAATCACCATAAATCCAGGTGCAGCAACGGATGAAAGATTCAGAGAAAACAATGGAACGCATGTGAACAATTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTACACATAAGTGAGGCACTGCAGATGCAAATAGAGGTGCAGAGAAGACTAAATGAGCAGCTTGAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGGCAAAATTTGGGAGTAGTAGGATTTGAAGCTGCTAAACTTCAACTTTCAGAGCTAGTGTCCAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGAGCTGAAGGAGTTACAAGGATTTAGCCCTCACCAAGCACAAACCAACCAACCAAATGACTGCTCCATGGACAGTTGCCTCACATCCTGTGAGGGGTCACAAAAAGAGCAAGAGATACAGAATGGGGGGATGAACCTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAAGTCATAGAGGGTCCCAATCTTAATAACCTCCCAACCAGTGACCTCAAGTGGTGTGATCCAGTGAAGAAGAACACCTTCCTTACCCCATTGAGCAAGCATGCAGAAAGAAGTTCAAGCAACTTGTCCATGAGCATTGGACTTGAAGCAGAAACTGAGAATGGTAGGACACAAGTGAAGCCATTGGCCGAGAAGGTTTCTCAAGATTATGGATTGCCTTCATACTTTCCTGCATCAAAACTGGACCTAACCACTGAAGATAATGACACTAGAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTAAGAAAATGGACAATGAAAGTACAATGTATTCACTGTAACTCATTCTGTAAACAATGTATCTAGCAGCTGCTGTTTACTTCAGTTGAGTTTAGTTATTTATAGTAGAATACAACATTGCAACTAACAAAGATCAACCGTAAATCTGTAGGCACTAATTATAATGGATATAG 1573 0.4202 IPCVTSSPPALIYNYLSKKVLHYEKCAVEKTDKHHKLTEVHLYITIKFYKYLQIEHHRVSPIGGSKGIYRIEATRLNMYTQGKNIHSSSRMTIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGIQGLTLYHLKSHLQKYRLSKSLHGHSNNASHKITINPGAATDERFRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGFEAAKLQLSELVSKVSSQCLNSAFSELKELQGFSPHQAQTNQPNDCSMDSCLTSCEGSQKEQEIQNGGMNLRPFNVHTFMERKEVIEGPNLNNLPTSDLKWCDPVKKNTFLTPLSKHAERSSSNLSMSIGLEAETENGRTQVKPLAEKVSQDYGLPSYFPASKLDLTTEDNDTRTSCKQLDLNGFSWN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02902 467 Pfam Myb-like DNA-binding domain 121 172 IPR001005 -
Pste1g02902 467 Gene3D - 118 176 - -
Pste1g02902 467 SUPERFAMILY Homeodomain-like 118 174 IPR009057 -
Pste1g02902 467 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 174 IPR006447 GO:0003677
Pste1g02902 467 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 82 392 IPR044848 GO:0003700
Pste1g02902 467 FunFam Myb family transcription factor 118 176 - -
Pste1g02902 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 176 IPR017930 -
Pste1g02902 467 Pfam MYB-CC type transfactor, LHEQLE motif 223 269 IPR025756 -
Pste1g02902 467 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02902 Pste-Chr1 12451922 12454912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02902 151 467 G2-like Transcription Factor Family AT3G04030 50.456 1.92e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste1g02902 Myb_DNA-binding 3.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03033 3 23119875 23122387 Pste1g02902 1 12451922 12454912 PCT