LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02893	GAAAGATAGAGACACTCCATGAAAGATAAAATGTTGCAAAGAGAATACATGAGATAAAGACCGGACCCTCTTGTTGTGCAACATATATATTACTTTGACAAGAAAGCTTTGATCTTTCGTTACTGTGTGAACTTGTCCATATTGTATTCCTTTTGTCCATAGAATTCCAAGGGAAACAGAGTATTCTTGCATGGCGAGCCAAAGAATAGGACAAACGGGTTTGTCTGAGTCAGGACCTTCAAATCACCACGTCCCTTATGGACTTCATGGGATTAATACCCCAGCATCAGGCATAATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAAAAATGAAGAAGCCAAAGCATCAGCTTTATTCACAGGCAGACCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACTCCAAGAGGAGGTTCAAAGTCAGGAGAGGAAAGCACCGATTCGGGATCAGGAATGAACACCCTTTCAAGTAAAACCGAGTTCCAATTTGAAACAGAATCTCCTATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAACAGCAACAACAGGAGACAACAACTGATGCCTCAAGAGCAGGCACATCACAGAATCAATCAGCAAGCAAATCACCTCAAGAAAAGAGAAAAGGAGTTGGTTCCACATCAGAGAAGCAACTAGATGCAAAGACACTTAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCATACGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTCACCCACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGAATGTTTATGGGTTGTGGTGGTGCCGGTGCCAATATAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGTTAGAAGATGACCACCAGCACATGGTGGAGCTCCGGAGCGGCATGCAGGCGGCGCTGTCTGACGGCGAACTTAGAATAATTGTGGATGGATATTTGTCTCATTATGATGAGGTTTTCAGGCTGAAAGGAGTGGCTGCTAAAACAGATGTGTTTCACCTTATCAATGGCACGTGGACTTCCCCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAGACCTTCTGAGCTCATCACAATGTTGATACCAAAGTTAGAACCCCTAGCGGAGCAGCAACTAATGGGCATATATGGGCTCCGGCATTCGTCAGTGCAAGCAGAAGAGGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTCGTTGACACTATCGCCGGCAGTCCCGTCGTCGATGGTGTGCAACAGATGGTCGCAGCCATGGCCAAGCTTGCCAACCTTGAAGGATTTGTTGCTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGGTTACTGACAGTTCGTCAAGCAGCGCGGTGTTTTCTTCTGATTGGAGAGTATTATGGTCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAGCGATGATAGCCAAACAACCACGGAGTTGCAAATGATTCAACCTTCTCAGAATCATTTCACAAGTTTCTGAAATATATTGTAATTGAAACAAGGTGGAAGTGGATTTCTTAGGGCTGCTTCAGAAGGAAAGTGAAGGATAAGCATCATCAAGAATTAATATTCTTTTTTTTCTTTTCAATCTTCCGCCATTGTGTCTCTTATGTTTTGTTGTAACTTGTATGTAAATGGAATTCGAGTTTTATGTGAATGACGAGGAATTAAGCTTCTA	1840	0.4364	MASQRIGQTGLSESGPSNHHVPYGLHGINTPASGIINQGSAFDFGELEEAIVLQGIKIKNEEAKASALFTGRPSATLEMFPSWPMRFQQTPRGGSKSGEESTDSGSGMNTLSSKTEFQFETESPISIKASSSDHHQAFDQQQQQETTTDASRAGTSQNQSASKSPQEKRKGVGSTSEKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGMFMGCGGAGANISSGAAMFDMEYARWLEDDHQHMVELRSGMQAALSDGELRIIVDGYLSHYDEVFRLKGVAAKTDVFHLINGTWTSPAERCFLWIGGFRPSELITMLIPKLEPLAEQQLMGIYGLRHSSVQAEEALTQGLEQLQQSLVDTIAGSPVVDGVQQMVAAMAKLANLEGFVAQADNLRQQTLHQLCRLLTVRQAARCFLLIGEYYGRLRALSSLWASRPRETLISDDSQTTTELQMIQPSQNHFTSF	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02893	483	FunFam	BZIP family transcription factor	182	231	-	-
	Pste1g02893	483	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	186	201	IPR004827	GO:0003700\|GO:0006355
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	88	111	-	-
	Pste1g02893	483	Pfam	Seed dormancy control	263	338	IPR025422	GO:0006351\|GO:0043565
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	129	169	-	-
	Pste1g02893	483	SUPERFAMILY	Leucine zipper domain	183	226	IPR046347	GO:0003700\|GO:0006355
	Pste1g02893	483	Pfam	bZIP transcription factor	182	224	IPR004827	GO:0003700\|GO:0006355
	Pste1g02893	483	PANTHER	TRANSCRIPTION FACTOR TGA9	119	457	-	-
	Pste1g02893	483	SMART	brlzneu	179	255	IPR004827	GO:0003700\|GO:0006355
	Pste1g02893	483	ProSiteProfiles	DOG1 domain profile.	246	454	IPR025422	GO:0006351\|GO:0043565
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	170	185	-	-
	Pste1g02893	483	CDD	bZIP_HBP1b-like	183	234	-	-
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	129	185	-	-
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	1	16	-	-
	Pste1g02893	483	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	181	225	IPR004827	GO:0003700\|GO:0006355
	Pste1g02893	483	Gene3D	-	182	231	-	-
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	80	111	-	-
	Pste1g02893	483	MobiDBLite	consensus disorder prediction	1	25	-	-
	Pste1g02893	483	Coils	Coil	209	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02893	Pste-Chr1	12405707	12413210	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02893	131	483	bZIP Transcription Factor Family	AT1G08320	68.802	0.0	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Pste1g02893		DOG1	3.8e-29	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03039	3	23144835	23151313	Pste1g02893	1	12405707	12413210	PCT