Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02876 CAGCCCTTTCTGAGGAGGAGAGAATTTCTCTTAGTCCTCTCCGAAGAATATGGGTTTGATGGAATGCAATGTAGAAGAGAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAGCCATGTTCTTCTCCACCTTCATATCTAAATTCCAATACAGTATCATCATCATCTTCTTCTTCTCCTTCTTATTCTTCTTTTACTCACAATGAGTTTGTTCAGGAAACCATCCAATTCTTGCCAATTTTAAGTGAAAAGGCCTCAAAAGATCAAGATCATCATGGAGTACAAATGGGGGGTTTTGAGGTGAAAGAGGAAAAGGTTGAACACGTAACTGTTGCTTTGCACATTGGATTGCCTGACACTAAAGGGCATGCTGAGGTTGATGAGAAAATGATTTTCCATGTGAAGGAAGAAGAAAAGAGAAGCTTCCGTGGATGCTCCTTTAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCTATGCAATTCGCTTGCTCCATATGTAGCAAAACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGAAAAGGACCAGATTCACTGAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGCTACTGTTGTGCCCAGGGGTGCAAGAACAACATCAATCATCCAAGGGCAAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAAGAAAGCACGGCACAAAGCCATTTATGTGCAGAAAATGTGGAAAAACATTTGCTGTGAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTTTGGTATTGCACTTGTGGCTCAGATTTCAAGCACAAAAGATCCCTTAAAGATCATATTAGGTCCTTTGGAAAGGGACATAACCCTCATCCACCCTTTGAAACTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAAGTTAACAATCATCACACATGATCTAACATTCTAAGGCTTTTCTTTACGACGAAGATATAGTAGTAACAAGGTTTTAAACAGTGGTCCCAGTTGTGGTTTCATTGCAATCTATAATGTTATGCAGCTGATAAAGTCACAAGGTAAAACCTTGAGTAGTGGTAATTAATTGTAGTAGAGTTTGGTCACTACGCTTGTGCTCAGTAACAAAAAATTCTCAACAACAGCTGAAGCATCAAGACTCAGGGAAAGGTTTGCTACCGAGCACTTGCAGGGTGGTGATGAGCTTTGGAGTAGTTTGCTTTTGGTTAATTAATTAATAAGATGGGTGCCTCAAGTGATGAAGCATATGAATTTTCTTCGCATAGCAACAGAGATCAGTACTGTTATGTCATGTTTAGTTTTATTGTAACCTCTTCAATGGAGGAAATTTATCAGCTTCATTACTGAATGGTAACCCTCATTCTATAGGTTATATATATATCAATAGTATGTAAAGTGTTGTTTAATCGTAATTAATTTATGACGCTTTCATGTGAATTTTCTGCATGCTATAAATGGATAGCCAACGTGTGCTAGACTTCTACG 1576 0.3928 MGLMECNVEENKNLYLHAPTFIEWLKPCSSPPSYLNSNTVSSSSSSSPSYSSFTHNEFVQETIQFLPILSEKASKDQDHHGVQMGGFEVKEEKVEHVTVALHIGLPDTKGHAEVDEKMIFHVKEEEKRSFRGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFETFEDEKECITGSDEDEVNNHHT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02876 320 SMART c2h2final6 203 235 IPR013087 -
Pste1g02876 320 SMART c2h2final6 156 178 IPR013087 -
Pste1g02876 320 SMART c2h2final6 240 260 IPR013087 -
Pste1g02876 320 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Pste1g02876 320 SUPERFAMILY beta-beta-alpha zinc fingers 225 260 IPR036236 -
Pste1g02876 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Pste1g02876 320 FunFam Zinc finger protein WIP2 209 291 - -
Pste1g02876 320 Gene3D Classic Zinc Finger 155 178 - -
Pste1g02876 320 SUPERFAMILY beta-beta-alpha zinc fingers 147 179 IPR036236 -
Pste1g02876 320 Pfam Zinc finger, C2H2 type 156 175 IPR013087 -
Pste1g02876 320 Gene3D Classic Zinc Finger 196 287 - -
Pste1g02876 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 260 IPR013087 -
Pste1g02876 320 PANTHER ZINC FINGER PROTEIN WIP2 21 311 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02876 Pste-Chr1 12327365 12331128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02876 7 308 C2H2 Transcription Factor Family AT1G08290 56.140 1.72e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g02876 zf-C2H2_6 0.00014 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03046 3 23249152 23252456 Pste1g02876 1 12327365 12331128 PCT