Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g02865 | CGAGGAATGTATAAATGGGCAACAAGAGGGATCGGGCGGGTTTGAAATAGGGAAGAAGAAGCGGTTCCCTCCGATCAGATCCTGGAAGAATTGTGAATCAAAATAGATCGAAGGAAGAGATGTACAGCAATTTCAAAGAGCAAGCGATAGTGTACGTGAAGCAAGCGGTGCAGGCAGACAATGAAGGCAACTACGCCAAAGCGTTTCAGCTTTACATGAACGCCTTAGAGTATTTCAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCTCAAATTCACCGAGTATCTGCGCCGCGCCGAGGAGATCCGGGCCGTCCTCGATGACGGTCCCAGCGCCCCCCCCTCTTCCGGGGATGCCGCCGTCGCCACGCGCCCCAAGTCCAAGCCCAAAGATGGTTCCAACGCCGACTGCGAGGATCCCGAGCAGGCCAAGCTTCGGGCCGGGCTCAACTCCGCCATCGTCAGGGAAAAGCCCAACGTCAAGTGGAACGACGTCGCCGGGCTCGAGAGCGCCAAACAGGCCTTGCAGGAAGCTGTTATCTTGCCCGTCAAGTTTCCGCAGTTCTTCACTGGTAAACGGCGACCTTGGAGAGCGTTTTTGTTGTACGGGCCGCCTGGAACGGGGAAATCTTATTTGGCCAAGGCCGTTGCCACAGAAGCCGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAATCTTTTCGAAATGGCTCGTGAAAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTCTGTGTGTTTCTGCTGTAGCTGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGATCAGGCAATAAGGCGGCGTTTTGATAAGCGTATTTACATACCCCTACCAGATTTAAAGGCTCGCCAACACATGTTCAAGGCATGGGCAACATACATGATAATGTTCATTAAAGGATTGGTGCACCTAGGTGATACTCCCCATAACTTGAATGAAAGTGATTTTGAACATTTGGCTCGCAGGACAGAGGGGTTTTCAGGCTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTACGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGGCCAAAGCAACAGAGTGCAGTACAAATTACAATGCAGGAACTTGCTGCGAAAGGACTTGCTTCTCAGATCCTGCCACCACCTATATCAAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACCGTAAGTAAGGCTGACCTTGGTGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAATTCTGATGGAATTTTTCTTCAATCATCTGCACTAGTTTAAACAAGTTATCATTTGTAATTTACAAAGTTATTGGATCAATTGAAATGCATATTTTACTGCTCATAATTTGTGTATAAGAACTGTCTGACATGATCAGAAAAATAAATTTTATGTCAATATGTGATGCCAATTACTTATGTTGAGA | 1588 | 0.4597 | MYSNFKEQAIVYVKQAVQADNEGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITLKFTEYLRRAEEIRAVLDDGPSAPPSSGDAAVATRPKSKPKDGSNADCEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCVSAVAGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKAWATYMIMFIKGLVHLGDTPHNLNESDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQSAVQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLGVHERFTKEFGEEG | 427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g02865 | 427 | Pfam | MIT (microtubule interacting and transport) domain | 8 | 70 | IPR007330 | - | |
| Pste1g02865 | 427 | PANTHER | AAA DOMAIN-CONTAINING | 21 | 425 | - | - | |
| Pste1g02865 | 427 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 125 | 422 | IPR027417 | - | |
| Pste1g02865 | 427 | Gene3D | - | 125 | 413 | IPR027417 | - | |
| Pste1g02865 | 427 | FunFam | vacuolar protein sorting-associated protein 4A | 279 | 407 | - | - | |
| Pste1g02865 | 427 | CDD | MIT_VPS4 | 4 | 76 | IPR045253 | - | |
| Pste1g02865 | 427 | ProSitePatterns | AAA-protein family signature. | 249 | 268 | IPR003960 | GO:0005524|GO:0016887 | |
| Pste1g02865 | 427 | SMART | AAA_5 | 162 | 279 | IPR003593 | GO:0016887 | |
| Pste1g02865 | 427 | Pfam | Vps4 C terminal oligomerisation domain | 360 | 424 | IPR015415 | - | |
| Pste1g02865 | 427 | FunFam | Suppressor of K+ transport growth defect 1 | 6 | 75 | - | - | |
| Pste1g02865 | 427 | Pfam | ATPase family associated with various cellular activities (AAA) | 167 | 277 | IPR003959 | GO:0005524|GO:0016887 | |
| Pste1g02865 | 427 | Gene3D | - | 6 | 75 | - | - | |
| Pste1g02865 | 427 | SMART | smart | 2 | 80 | IPR007330 | - | |
| Pste1g02865 | 427 | MobiDBLite | consensus disorder prediction | 73 | 107 | - | - | |
| Pste1g02865 | 427 | FunFam | Vacuolar protein sorting-associated protein 4 | 125 | 286 | - | - | |
| Pste1g02865 | 427 | SUPERFAMILY | MIT domain | 2 | 83 | IPR036181 | - | |
| Pste1g02865 | 427 | Gene3D | - | 279 | 407 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste1g02865 | Pste-Chr1 | 12245984 | 12250294 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g02865 | 161 | 348 | Calmodulin-binding Proteins | AT3G56690 | 30.288 | 5.01e-26 | 109 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste1g02865 | 1 | 12245984 | 12250294 | Pste1g02865 | 1 | 12245984 | 12250294 | ECH | |
| Pste3g03052 | 3 | 23296443 | 23307105 | Pste1g02865 | 1 | 12245984 | 12250294 | PCT |