Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02831 ATGGCTAGGCTTTTTGTGGTGAGGGTTATTGCTATTGACATTAGAAGGAGTTGCAGAAAGGTGGGTTTGCAAGGTCATAAATGGTGTGTAAGGAGCGGTGAAGATTACGGTAAGGAGCAGTGCAGATTAAGTTCCAGTGAGAGCTTATTAGTCTCAGCAAACCCTAATGTACGAAGCAATTGTCCGCAGAAGAGGAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGGCACCCGGTGTATAGGGGTGTACGTCAAAGAAACGGGAACAGATGGGTGTGCGAAATAAGGGAACCAAACAAAAAATCAAGAATTTGGGTAGGGACGTACCCTACTCCTGAAATGGCAGGTAGGGCACACGACGTGGCTGTCTTGGCACTTCTTGGCCCCTCAGCAAAGTTCAATTTCCCCGATTCAGTTTCCCTTCTCCCACTTCCAAAGTCAACTTCTGCCATACACATCAGAGAAGCTGCAAAAGCTATTAATATTACTGCTGCTCAACCTTTCATGCCAAACGCCGCCTCTCACAACGGTTCTAATTTTGCCCAAGACAGGAACGCTTTGACCAATCATCACTCCCAAACCATGTTCTTTGATGAAGAGGCACTCTATAATATGCCAGCTTTGTTGGATAGTATGGCTGAGGGTTTGCTTATTACCCCACCCTCTGCCAAAAGACCAATGGATTGGGACCATGTTATCGACTTGACTCTCTGGACAAACTAA 723 0.4606 MARLFVVRVIAIDIRRSCRKVGLQGHKWCVRSGEDYGKEQCRLSSSESLLVSANPNVRSNCPQKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEIREPNKKSRIWVGTYPTPEMAGRAHDVAVLALLGPSAKFNFPDSVSLLPLPKSTSAIHIREAAKAINITAAQPFMPNAASHNGSNFAQDRNALTNHHSQTMFFDEEALYNMPALLDSMAEGLLITPPSAKRPMDWDHVIDLTLWTN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02831 240 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Pste1g02831 240 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Pste1g02831 240 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 45 239 IPR045277 GO:0003700
Pste1g02831 240 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Pste1g02831 240 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Pste1g02831 240 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Pste1g02831 240 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Pste1g02831 240 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Pste1g02831 240 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02831 Pste-Chr1 11939467 11943153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02831 54 239 AP2-EREBP Transcription Factor Family AT5G51990 47.739 1.81e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste1g02831 AP2 8.5e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02831 1 11939467 11943153 Pste1g02831 1 11939467 11943153 ECH