Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste1g02816 | ATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTAAAGAAACAAGCAAGGAAGGACCTTGAAGATGATCTTGACATTGAAGAAGGGAACCTCAACCCCACAGACGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAATTAATCAAGGTTGAAATGGAAGAGATTACCAATCTCTTATTTGATCTTCAGCAACTTAATGAAGAGACAAAGTGCACCCACAGTGCCAAAGTTCTTCGTGGCCTAAGGGACAGGATGGAGTCAGACATGGTTGCCGTGCTTCGCAAGGCACGGACGATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAACCAATCGCAGTTTATCAGAATCATACAAAGAAGGGAGCCCCGTTGATAGGACCAGAATGTCTATCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAATTTCAGTCCTTGAGAGACAATATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTACACAGCAACGGGTGAGGTTCCCACTGAGGAGATCATGGAGAAGATGGTTTCAGGGAGTCTCAAAGTGGAGGTTTTGGCTGGCAAGACAGATGCTGATTTGAGCACTCAGGTTAGGCATGAGGCAGTGATGGATATCCAAAGAAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGTTATTCTGGTTGAGACTCAAGGAGAAAACGTGGATAGCATTGAGGATAATGTGGCTAATGCAGGTAACTTCATCCATGGTGGAACTAATAGTCTTTACTATGCCAACCAGATGAAAAAGAACAGAAAATGGGTCTATTGGGTTTTAGCTGTGGGGCTGATTATACTACTCGATAGTTCGATTTCTACGCCCTTTAACGGTGGCTATGCTGCTCCTTCCACCAAATGCAGAGCAGACCATGGCCTTACTGGGAGATGTTCAAGTATGAAAGAACTGATGCAGATTCATGGCCAATTGTTGAAAAAAGGCACCATTGAGAACCAGTTAACAGTAAGCAGGCTCCTGGCTTCATTTGCAAGAATAGAGTTGGGCAACTTGGTCCATACTCGTATGGTTTTTGACAGAATTAGCTCACCTAATACTGTCATGTGGAACGCCATGATCAGAGCATACTCAAATAGTAATGACCCAGAAGCAGCGCTGCTTTTGTACCATCAAATGCTTCACCATTCAGCACCTCACAATTCTTACACTTTCCCTTTCCTTCTCAAAGCTTGTTCTGCTATCTCAGCCTTCGAAGAAACCCAGCAAATCCATGCTCACATTATCAAACGAGGTTTTGGTTTGGAGGTGTATGCCACAAACTCTCTCCTTCGTGTTTATGCAATTTCAGGCAACATCCAATCTGCACACGTCCTATTCCATCAGCTCCCCACGCGAGATATTGTTTCTTGGAATACAATGATTGATGGGTATATAAAATTCGGAAACGTAGGCATGGCCTACAAGATTTTTCAAGCTATGCCAGTAAAGAATGTCATCTCTTGGACAACCATGATTATTGGGTTTGTTAGAGCAGGCATACACAAAGAAGCTCTGTCTCTTCTACAGAAAATGTTGGTTGCAGGCATCAAACCTGACAGTGTAACCCTGAGTTGCTCTCTTTCAGCGTGTGCGGGACTTGGAGCAAATTGTGAGGACGATGAAAATGAATCCAGTGAATGTGAGGAGATAGAATAA | 1713 | 0.4302 | MNDLMTKSFLSYVELKKQARKDLEDDLDIEEGNLNPTDDRNLSQFFQEVELIKVEMEEITNLLFDLQQLNEETKCTHSAKVLRGLRDRMESDMVAVLRKARTIKAMLEVLDQSNITNRSLSESYKEGSPVDRTRMSITNGLRVKLRDMMNEFQSLRDNILSDHKEDLKRRYYTATGEVPTEEIMEKMVSGSLKVEVLAGKTDADLSTQVRHEAVMDIQRSLNKLHQVFLDMVILVETQGENVDSIEDNVANAGNFIHGGTNSLYYANQMKKNRKWVYWVLAVGLIILLDSSISTPFNGGYAAPSTKCRADHGLTGRCSSMKELMQIHGQLLKKGTIENQLTVSRLLASFARIELGNLVHTRMVFDRISSPNTVMWNAMIRAYSNSNDPEAALLLYHQMLHHSAPHNSYTFPFLLKACSAISAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFHQLPTRDIVSWNTMIDGYIKFGNVGMAYKIFQAMPVKNVISWTTMIIGFVRAGIHKEALSLLQKMLVAGIKPDSVTLSCSLSACAGLGANCEDDENESSECEEIE | 570 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste1g02816 | 570 | Pfam | PPR repeat family | 502 | 550 | IPR002885 | - | |
Pste1g02816 | 570 | Pfam | PPR repeat family | 370 | 417 | IPR002885 | - | |
Pste1g02816 | 570 | Pfam | PPR repeat | 446 | 471 | IPR002885 | - | |
Pste1g02816 | 570 | Gene3D | - | 37 | 168 | - | - | |
Pste1g02816 | 570 | CDD | SNARE_syntaxin1-like | 208 | 263 | - | - | |
Pste1g02816 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 472 | 502 | IPR002885 | - | |
Pste1g02816 | 570 | Coils | Coil | 13 | 33 | - | - | |
Pste1g02816 | 570 | SMART | SynN_4 | 37 | 164 | IPR006011 | GO:0016020 | |
Pste1g02816 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 371 | 405 | IPR002885 | - | |
Pste1g02816 | 570 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 503 | 537 | IPR002885 | - | |
Pste1g02816 | 570 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 480 | 553 | IPR046960 | GO:0003723|GO:0009451 | |
Pste1g02816 | 570 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
Pste1g02816 | 570 | NCBIfam | pentatricopeptide repeat | 373 | 400 | IPR002885 | - | |
Pste1g02816 | 570 | NCBIfam | pentatricopeptide repeat | 505 | 539 | IPR002885 | - | |
Pste1g02816 | 570 | NCBIfam | pentatricopeptide repeat | 474 | 501 | IPR002885 | - | |
Pste1g02816 | 570 | FunFam | Syntaxin 132 | 199 | 293 | - | - | |
Pste1g02816 | 570 | SUPERFAMILY | t-snare proteins | 40 | 259 | IPR010989 | GO:0016020|GO:0016192 | |
Pste1g02816 | 570 | Coils | Coil | 52 | 72 | - | - | |
Pste1g02816 | 570 | FunFam | Pentatricopeptide repeat-containing protein At5g66520 | 311 | 468 | - | - | |
Pste1g02816 | 570 | Gene3D | - | 201 | 292 | - | - | |
Pste1g02816 | 570 | CDD | SynN | 42 | 192 | IPR006011 | GO:0016020 | |
Pste1g02816 | 570 | Gene3D | Tetratricopeptide repeat domain | 471 | 567 | IPR011990 | GO:0005515 | |
Pste1g02816 | 570 | Pfam | Syntaxin | 44 | 239 | IPR006011 | GO:0016020 | |
Pste1g02816 | 570 | Gene3D | Tetratricopeptide repeat domain | 313 | 470 | IPR011990 | GO:0005515 | |
Pste1g02816 | 570 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 39 | 170 | - | - | |
Pste1g02816 | 570 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste1g02816 | Pste-Chr1 | 11805394 | 11808408 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste1g02816 | 1 | 293 | SNARE and Associated Proteins | AT2G18260 | 62.376 | 4.57e-127 | 373 |