Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02816 ATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTAAAGAAACAAGCAAGGAAGGACCTTGAAGATGATCTTGACATTGAAGAAGGGAACCTCAACCCCACAGACGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAATTAATCAAGGTTGAAATGGAAGAGATTACCAATCTCTTATTTGATCTTCAGCAACTTAATGAAGAGACAAAGTGCACCCACAGTGCCAAAGTTCTTCGTGGCCTAAGGGACAGGATGGAGTCAGACATGGTTGCCGTGCTTCGCAAGGCACGGACGATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAACCAATCGCAGTTTATCAGAATCATACAAAGAAGGGAGCCCCGTTGATAGGACCAGAATGTCTATCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAATTTCAGTCCTTGAGAGACAATATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTACACAGCAACGGGTGAGGTTCCCACTGAGGAGATCATGGAGAAGATGGTTTCAGGGAGTCTCAAAGTGGAGGTTTTGGCTGGCAAGACAGATGCTGATTTGAGCACTCAGGTTAGGCATGAGGCAGTGATGGATATCCAAAGAAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGTTATTCTGGTTGAGACTCAAGGAGAAAACGTGGATAGCATTGAGGATAATGTGGCTAATGCAGGTAACTTCATCCATGGTGGAACTAATAGTCTTTACTATGCCAACCAGATGAAAAAGAACAGAAAATGGGTCTATTGGGTTTTAGCTGTGGGGCTGATTATACTACTCGATAGTTCGATTTCTACGCCCTTTAACGGTGGCTATGCTGCTCCTTCCACCAAATGCAGAGCAGACCATGGCCTTACTGGGAGATGTTCAAGTATGAAAGAACTGATGCAGATTCATGGCCAATTGTTGAAAAAAGGCACCATTGAGAACCAGTTAACAGTAAGCAGGCTCCTGGCTTCATTTGCAAGAATAGAGTTGGGCAACTTGGTCCATACTCGTATGGTTTTTGACAGAATTAGCTCACCTAATACTGTCATGTGGAACGCCATGATCAGAGCATACTCAAATAGTAATGACCCAGAAGCAGCGCTGCTTTTGTACCATCAAATGCTTCACCATTCAGCACCTCACAATTCTTACACTTTCCCTTTCCTTCTCAAAGCTTGTTCTGCTATCTCAGCCTTCGAAGAAACCCAGCAAATCCATGCTCACATTATCAAACGAGGTTTTGGTTTGGAGGTGTATGCCACAAACTCTCTCCTTCGTGTTTATGCAATTTCAGGCAACATCCAATCTGCACACGTCCTATTCCATCAGCTCCCCACGCGAGATATTGTTTCTTGGAATACAATGATTGATGGGTATATAAAATTCGGAAACGTAGGCATGGCCTACAAGATTTTTCAAGCTATGCCAGTAAAGAATGTCATCTCTTGGACAACCATGATTATTGGGTTTGTTAGAGCAGGCATACACAAAGAAGCTCTGTCTCTTCTACAGAAAATGTTGGTTGCAGGCATCAAACCTGACAGTGTAACCCTGAGTTGCTCTCTTTCAGCGTGTGCGGGACTTGGAGCAAATTGTGAGGACGATGAAAATGAATCCAGTGAATGTGAGGAGATAGAATAA 1713 0.4302 MNDLMTKSFLSYVELKKQARKDLEDDLDIEEGNLNPTDDRNLSQFFQEVELIKVEMEEITNLLFDLQQLNEETKCTHSAKVLRGLRDRMESDMVAVLRKARTIKAMLEVLDQSNITNRSLSESYKEGSPVDRTRMSITNGLRVKLRDMMNEFQSLRDNILSDHKEDLKRRYYTATGEVPTEEIMEKMVSGSLKVEVLAGKTDADLSTQVRHEAVMDIQRSLNKLHQVFLDMVILVETQGENVDSIEDNVANAGNFIHGGTNSLYYANQMKKNRKWVYWVLAVGLIILLDSSISTPFNGGYAAPSTKCRADHGLTGRCSSMKELMQIHGQLLKKGTIENQLTVSRLLASFARIELGNLVHTRMVFDRISSPNTVMWNAMIRAYSNSNDPEAALLLYHQMLHHSAPHNSYTFPFLLKACSAISAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFHQLPTRDIVSWNTMIDGYIKFGNVGMAYKIFQAMPVKNVISWTTMIIGFVRAGIHKEALSLLQKMLVAGIKPDSVTLSCSLSACAGLGANCEDDENESSECEEIE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02816 570 Pfam PPR repeat family 502 550 IPR002885 -
Pste1g02816 570 Pfam PPR repeat family 370 417 IPR002885 -
Pste1g02816 570 Pfam PPR repeat 446 471 IPR002885 -
Pste1g02816 570 Gene3D - 37 168 - -
Pste1g02816 570 CDD SNARE_syntaxin1-like 208 263 - -
Pste1g02816 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 502 IPR002885 -
Pste1g02816 570 Coils Coil 13 33 - -
Pste1g02816 570 SMART SynN_4 37 164 IPR006011 GO:0016020
Pste1g02816 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Pste1g02816 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Pste1g02816 570 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 480 553 IPR046960 GO:0003723|GO:0009451
Pste1g02816 570 SMART tSNARE_6 199 266 IPR000727 -
Pste1g02816 570 NCBIfam pentatricopeptide repeat 373 400 IPR002885 -
Pste1g02816 570 NCBIfam pentatricopeptide repeat 505 539 IPR002885 -
Pste1g02816 570 NCBIfam pentatricopeptide repeat 474 501 IPR002885 -
Pste1g02816 570 FunFam Syntaxin 132 199 293 - -
Pste1g02816 570 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Pste1g02816 570 Coils Coil 52 72 - -
Pste1g02816 570 FunFam Pentatricopeptide repeat-containing protein At5g66520 311 468 - -
Pste1g02816 570 Gene3D - 201 292 - -
Pste1g02816 570 CDD SynN 42 192 IPR006011 GO:0016020
Pste1g02816 570 Gene3D Tetratricopeptide repeat domain 471 567 IPR011990 GO:0005515
Pste1g02816 570 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Pste1g02816 570 Gene3D Tetratricopeptide repeat domain 313 470 IPR011990 GO:0005515
Pste1g02816 570 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Pste1g02816 570 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02816 Pste-Chr1 11805394 11808408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02816 1 293 SNARE and Associated Proteins AT2G18260 62.376 4.57e-127 373