Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02809 ATGGGAAAAGGAAGTAAAATGTTGGAGAAGTGTGGTAAGGTGGGTAGGGGAAGGAAGTATTACCGGTTGGCGGGTGCAAGTAACGGGGAGGGCGTGGAGCAACCCTCAGACGGGAGCATAGCGAAACTGGTTCTGGAATCGGAGTGGGCAGTGGAAGTGGAAGAAGCACTATGGAAGGGAAGGATCGAATGGAAGGCAGAGCTGGTGAACAAGGTCCTGAAGCGCCTCTGGAACCACGGCCCCAAGGCCCTTCAATTCTTCAAACACCTTGACCGCCACCCCACCTACATCCACTCCCCCTCCTCCTTCCACCACGCCATCGACATTGCCGCCCGCATGCACGACTACAACTCCGCCTGGGCCTTTTTCTCCCGCATGCGCTCCCTCCGCTGCGGCCCATCTCCCAAATCCTTCGCCATCCTCGCCGAGCGCTACGCCTCCAACGGCAAGCCCCACCGCGCCGTCCGAGCCTTCCTCTCCATGCACCTCCACGGTTGCCCCCAGGACCTTCACTCCTTCAACACACTCCTCGACATCCTCTGCAAATCCCACCGCGTCGATATGGCGCATCACCTTTTCAAAACCCTCTTTTCCAGGTTCAAACCCGATGCCGTTTCTTACAACATCATCGCCAACGGTTATTGTTTACTGAAACGCACGCCGCTCGCGTTGCAGGTTTTGAAGGAAATGGTTCACCGAGGGATTCAACCTACCCTGGTCTCTTATAACACCTTGTTGAAAGGCTATTTTAGAAGCAATCAGATTAAGGACGCTTGGGCGTTTTATTTGGAGATGCAGAAGAGGAAGTGCCAGATTGATGTCGTCACTTACACCACTATGATTCACGGGTTTGGGGTAGCCGGTGATGTTAAGAAATCCCGGAGGGTTTTTCATGAGATGGTCAAGGAGGGTGTGGTTCCTAGTGTTGCTACGTATAACGCTTTGATTCAGGTTTTGTGTAAGAAAGACACTGTGGAGAATGCTGTGTTGGTTTTTGAGGATATGGTCACGGAGGGTGTCTGTCTGCCTAATTTAGTTACTTACAATCTTGTCATCAGAGGTTTGTGTCATGTTGGGGACATGGAGAGGGCTTTGGGGTTTATGGGGAGGATGGAGGAGCATGGTTTGAGGCCTAGTGTTCAGACTTATAATGTCGTGATTCGCTACTTTTGTGACGCTGGGGAGATTGAGAAGGGTTTGGACATGTTTGGGAAGATGGGAGATGGGTCTTGCTTGCCCAATTTGGATACTTATAATGTTTTGATTAGTGCGATGTTTATGAGGAAGAAATCCGAGGATTTGGTGGTGGCTGGCAAGTTGTTGATTGAGATGGTTGATAGAGGGTTTTTGCCGCGGAAGTTTACTTTTAATAGGGTGTTGGATGGACTTGTTATTACTGGCAATCAGGAATTTGCAAAGGAGATACTCAGAATGCAGAGCAGGAATACAATCCACATGATTCTGAACTATTGGAAATATGTGTGTTCAAGTTGGAAGTATGTTTTACATTCTGTAATTTTGGCCAAGTTTGTGCATTCTGCAGAACACTTCGGTGATGAACCCATGATAGCTTAAAATCTTGCCTTCAACAGCTCCTCATTCAGGCCTGAAGATGGGAGAACACTCAAACCTATTTGCCTGCTACAACTTTGCCACATTGAGGTGGTGCTACATGATTCGTTTTCCTTTTCCTGGCTGAAAAAAGTACTATGATTTGGGATTTGGTCAATTTAACATGTGGAGAAGAAAAATGGACATAAGCCTCGTTTGATTGCCCCTTGGGAAATGCAAGTCCACAAGAGCATACCCACCTGATTTTGACGTGTAAAATCTGCGTTGTTGGTCTCCCATCTCATTCTTGTCTAAAATAATTGGGAATGAGAACAAATACGGATTTGTTAGTTTTCGTCCCACCTCTGTCTCG 1924 0.4802 MGKGSKMLEKCGKVGRGRKYYRLAGASNGEGVEQPSDGSIAKLVLESEWAVEVEEALWKGRIEWKAELVNKVLKRLWNHGPKALQFFKHLDRHPTYIHSPSSFHHAIDIAARMHDYNSAWAFFSRMRSLRCGPSPKSFAILAERYASNGKPHRAVRAFLSMHLHGCPQDLHSFNTLLDILCKSHRVDMAHHLFKTLFSRFKPDAVSYNIIANGYCLLKRTPLALQVLKEMVHRGIQPTLVSYNTLLKGYFRSNQIKDAWAFYLEMQKRKCQIDVVTYTTMIHGFGVAGDVKKSRRVFHEMVKEGVVPSVATYNALIQVLCKKDTVENAVLVFEDMVTEGVCLPNLVTYNLVIRGLCHVGDMERALGFMGRMEEHGLRPSVQTYNVVIRYFCDAGEIEKGLDMFGKMGDGSCLPNLDTYNVLISAMFMRKKSEDLVVAGKLLIEMVDRGFLPRKFTFNRVLDGLVITGNQEFAKEILRMQSRNTIHMILNYWKYVCSSWKYVLHSVILAKFVHSAEHFGDEPMIA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02809 524 Gene3D Tetratricopeptide repeat domain 196 302 IPR011990 GO:0005515
Pste1g02809 524 Gene3D Tetratricopeptide repeat domain 372 506 IPR011990 GO:0005515
Pste1g02809 524 Gene3D Tetratricopeptide repeat domain 61 186 IPR011990 GO:0005515
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Pste1g02809 524 Gene3D Tetratricopeptide repeat domain 303 371 IPR011990 GO:0005515
Pste1g02809 524 NCBIfam pentatricopeptide repeat 311 343 IPR002885 -
Pste1g02809 524 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Pste1g02809 524 NCBIfam pentatricopeptide repeat 275 309 IPR002885 -
Pste1g02809 524 NCBIfam pentatricopeptide repeat 346 379 IPR002885 -
Pste1g02809 524 NCBIfam pentatricopeptide repeat 240 274 IPR002885 -
Pste1g02809 524 NCBIfam pentatricopeptide repeat 382 414 IPR002885 -
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Pste1g02809 524 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 154 433 - -
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 199 IPR002885 -
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Pste1g02809 524 Pfam PPR repeat 304 336 IPR002885 -
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Pste1g02809 524 Pfam PPR repeat family 237 284 IPR002885 -
Pste1g02809 524 Pfam PPR repeat family 343 391 IPR002885 -
Pste1g02809 524 Pfam PPR repeat family 169 215 IPR002885 -
Pste1g02809 524 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Pste1g02809 524 SUPERFAMILY TPR-like 72 239 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02809 Pste-Chr1 11768874 11772431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02809 288 521 Glycosyltransferase AT1G05670 28.390 1.30e-17 84.3