Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02806 ATGGTGATTGCAGATGTTGTGGTTGAAGGAAGATTGATATGGTGTGGGAAAATGTCGTTGAAAAGCATAGTGAGGGAACTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGACGAGGTGTGGAAAGCAGGCGTTGGAACGGTAGGACTAAGTCACATGTTGCTCCTGATGTCACTCTAACTTCGCTTGAACTAATTCAGCAAGGGCAGTGGGCCAATTTGCCCCCTGAATTGCTTCTCGACATAATAAGGAGGGTAGAAGAGAGTGAGACTACATGGCCTGCTCGCACCGTTGTTCTTTATTGTGGTTCCGTTTGTAAATCTTGGAGGGCCGTTACCAAAGAGATTGTAAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCTATTTCGTTGAAGCAGGAGGAAGAGAGAAACTTCAACATATTTATTGTACATTGGTCTGGTGCCATGTCTAATTTTTTGGGTACCAAGTTCACTATCTATGACAGTCAACCCCCACATGGAGCTGCAATTCAACCGAATATTCGGTCTAGTAGGAGATTTCATTCTAAGCAGATATCTCCTAGAGTTTCAGCATGTAACTATGTTGTTAGCACCGTTGCCTATGAGTTGAACGTTCTGCGCGCGAGAGGACCAAGGAGAATGCACTGCACAATGAACTCCATACCAGTCTCAGCTGTTCAGGAAGGGGGCAGTGCTCCAACTCCTACATCTTTTCCTCAAATCATCGACCAGCCTTTTTCTCCCTCACCAGCACTGAAAGGGAAAGGTCCCATTAGTGATTTAAACAATGCAAGCCTCCCAGAGGTGCCAGTCGAGAGCCAAGACTCAACGGAATCTCTGGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAACTGCAGTGCTGGTGCCTAAATTTTAAGGGCCGTGTTACAGTAGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCAGCAGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAAATTGGAAAAGACATATTTACCATGGATTACCGATATCCACTCTCTGCCTTCCAAGCCTTTGCCGTATGCTTGAGCAGCTTTGATACCAAACCGGCCTGTGAATGAGACCAATGGCACTGGTCATCTGCTGGAGTGGCTTTTATACCAAACCAGCCTGTGAATGAGACCATGAATCCATGATACTGGACCGTCTGCTGGTTTGTGTCATATTCATATATATAATATCCTTGACACAGTTCATCAGGCATGGTAGACATGCAACTTGATATCTTAGCTATGCAGTCTTTAGTATTTTCCCATTGTGTTGTTAGTTGTTGATTCTGGAATTTTACTTTATGCTGTTTCATAGTCCCGCAACTAAAAGTTTAGTGAATCTTCAATTTTATAATATAAAGTCGCATGGTATTCTCAC 1435 0.4348 MVIADVVVEGRLIWCGKMSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPDVTLTSLELIQQGQWANLPPELLLDIIRRVEESETTWPARTVVLYCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQEEERNFNIFIVHWSGAMSNFLGTKFTIYDSQPPHGAAIQPNIRSSRRFHSKQISPRVSACNYVVSTVAYELNVLRARGPRRMHCTMNSIPVSAVQEGGSAPTPTSFPQIIDQPFSPSPALKGKGPISDLNNASLPEVPVESQDSTESLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAVCLSSFDTKPACE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02806 375 Gene3D - 66 120 - -
Pste1g02806 375 Pfam Tub family 152 370 IPR000007 -
Pste1g02806 375 Pfam F-box domain 72 119 IPR001810 GO:0005515
Pste1g02806 375 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
Pste1g02806 375 SUPERFAMILY Tubby C-terminal domain-like 151 375 IPR025659 -
Pste1g02806 375 PANTHER TUBBY-RELATED 61 139 - -
Pste1g02806 375 SUPERFAMILY F-box domain 67 116 IPR036047 GO:0005515
Pste1g02806 375 Gene3D Tubby Protein; Chain A 128 375 IPR025659 -
Pste1g02806 375 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Pste1g02806 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Pste1g02806 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Pste1g02806 375 PRINTS Tubby superfamily signature 196 223 IPR000007 -
Pste1g02806 375 PRINTS Tubby superfamily signature 147 171 IPR000007 -
Pste1g02806 375 PRINTS Tubby superfamily signature 285 302 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02806 Pste-Chr1 11760752 11762882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02806 18 375 TUB Transcription Factor Family AT2G18280 51.683 1.13e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste1g02806 Tub 2.9e-77 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02806 1 11760752 11762882 Pste1g02806 1 11760752 11762882 ECH
Pste7g01511 7 13845841 13847725 Pste1g02806 1 11760752 11762882 ECH
Pste1g02806 1 11760752 11762882 Pste7g01511 7 13845841 13847725 PCT