Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02795 ACTACTGTACTAGTCACCACTATTTCTGAGTGCAGAACAACCTCTTTCCCTGTTCCTTTCCTACTTGGTTTTTATGGGTCTGGATGGCTGAAAGCAAAGTTGATGGAAATGAGAAGGCAAGATAAGGAAATAGAGATACCAACCACAACCACTTTGGGTTACAACCTTCCCAACAGAGATTCTTCTTCTTCCTCTTCCAAGCCCTCTTCTTCAACTATTGGTGAAAGAAGTAGTGGCGATCATGATCAACCATCTCACCAAACTCGCACATTAATCTTCAATGAACCAGGTCGCCATAATCTCTATCCACTACCACCACCACCTCCTCCTCTTGCACCCCGTCAACATCATAGACCCACATCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAACGCCCCAAGAACAGCGCCGCCTCAAACAACAACAACAGCAACCTCGACCCCCTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCTAGCATGGGGAGCCACGTGGTGGATGGCTGCGGAGAGTTCATGGCAAGTGGAGAAGAAGGCACGCCGGAATCACTAAGATGCGCGGCGTGTGAATGCCACCGCAACTTCCACAGAAAAGAAGTCGAAGGAGAAGTACAACCACAAGCACAGCATGTTTCCAATTATCACAGCTACTACCCCAACAAGCACAATGGTCATCTTCACTTCCCTACACCCTCTTCTTCTTCCCTCCATCATAGATTGCTTACCAATACAGCTGCACCAAGCTTGGTTCCCCCAGTGATGATGGCCTTTGGAGGCCAAGCTGAGTCATCAAGTGAAGATCTCAACATGTTTCAGTCCAACACAGGGGCACAGTTGTCAGTGCAGGCACCTCTTTCTTCCAAGAAGAGGTTCAGGACTAAGTTCTCTCAGCACCAGAAAGATAGGATGATGGAGTTTGCTGACAAGATTGGTTGGAAGATCCAGAAACATAATGACCAGGAGGTACAGCAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAGCAAACAACTAAGAAGCAGCAAATAAGGCTTTGGAGAAAATGGGATCCCACACTCATGAGTCATGACCCAACCACAATTTTGTCCTCTCATAGTCAT 1143 0.4742 TTVLVTTISECRTTSFPVPFLLGFYGSGWLKAKLMEMRRQDKEIEIPTTTTLGYNLPNRDSSSSSSKPSSSTIGERSSGDHDQPSHQTRTLIFNEPGRHNLYPLPPPPPPLAPRQHHRPTSDPDLSTPIAPTSNAPRTAPPQTTTTATSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGEVQPQAQHVSNYHSYYPNKHNGHLHFPTPSSSSLHHRLLTNTAAPSLVPPVMMAFGGQAESSSEDLNMFQSNTGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFADKIGWKIQKHNDQEVQQFCSQVGVKRQVFKVWMHNNKQTTKKQQIRLWRKWDPTLMSHDPTTILSSHSH 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02795 381 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 154 205 IPR006456 -
Pste1g02795 381 Gene3D - 279 354 - -
Pste1g02795 381 SUPERFAMILY Homeodomain-like 287 354 IPR009057 -
Pste1g02795 381 MobiDBLite consensus disorder prediction 46 150 - -
Pste1g02795 381 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 155 204 IPR006456 -
Pste1g02795 381 NCBIfam homeobox domain, ZF-HD class 293 350 IPR006455 -
Pste1g02795 381 MobiDBLite consensus disorder prediction 100 116 - -
Pste1g02795 381 MobiDBLite consensus disorder prediction 46 94 - -
Pste1g02795 381 MobiDBLite consensus disorder prediction 125 150 - -
Pste1g02795 381 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 134 351 - -
Pste1g02795 381 Pfam ZF-HD protein dimerisation region 153 205 IPR006456 -
Pste1g02795 381 FunFam Zinc-finger homeodomain protein 2 280 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02795 Pste-Chr1 11638712 11641201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02795 126 357 ZF-HD Transcription Factor Family AT2G18350 51.261 5.71e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste1g02795 ZF-HD_dimer 2.1e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02795 1 11638712 11641201 Pste1g02795 1 11638712 11641201 ECH
Pste7g01491 7 13665318 13666256 Pste1g02795 1 11638712 11641201 ECH
Pste1g02795 1 11638712 11641201 Pste7g01491 7 13665318 13666256 PCT