Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02790 ATCCGCTCTTCTTTCTGCTCTGCATTTTCAATTACTAGGGTTATCGCCTTTCATATCTATCTCTCTTTCACTTTCTTATGCTTCCAGAAATCCACACTCTCCGTTCATCTAAGCGCTTCAATTTCGAACCCTATTGAAGTTCTCTCTCCGTTTCGAATCCTTTCTCCATTTCCCGAATTCTTCAATTTCCCTCCACTCCACTCTTCCATTTTCACTCCCATTTTTCTTCAATTTTGCTCAGTGTATGGACCATGTCCGATCTGATTGAACCCTAGTGGTCGAAGCAGTTTTATTTTATTATCGTCGAGAAAAGATTACATAGATAGTGGCCGTGAAGTATCCAAGCTTAAGGTTGGAATATGGAAGCACCACAGAAAAGATCAAGGGGTCGGCCAAGGAAACACAGAAGAAATGAGGCTGAAAGCGAGAACGAAGTGAAGGGGCAGGCCGTGGGGACACAAGCAATCGCCTTGGTTGGGAAGTACGTTTTAAAAAATTTCCCCGGAAATGGGGTTTTCTTGGGCAAAGTAGTGTACTATGAGTGTGGGCTCTACAGAGTGAATTACGAGGATGGCGATTTCGAGGACCTGGACAGTGCTGAGGTTCGTGCCATCCTTGTAAAGGATGATGGTTTTGATGCCAATTTGAGCCGAAGGAGAGGGTTGTTGGATAAATTGGTGTCCAAGGGTAGTAGAAAGGTCAAAGATGTTTCGGAGAAGGGGCCTGCTGAACCAACTAAGGAGGATGACTCTTTAAGGGAATTAGATGCTGGGTCTGTCCTTCAGAAGCATGACGATGAAGGGGATGATGATGACGATCCAGATGAAGATTGTTCCAGTGACTCTGGCACGAGTTCAGGGGGAAGGGATGACGCTGAGACACTGCCACCACCACCGCCACCACCACCAGAGTTTCCGCCATCCTCCGGGACCATTGGCGTTCCCGAGCAGTGTGTTTCGCATCTCTTATCAGTTTATGGATTTCTGAGATCCTTCAGTATCCGGTTGTTTTTACTTCCCTTTACTCTGGATGAATTCATTGGTGCTATCAACTGCCGTGTCCCAAACTCACTCTTTGATGCCATTCATGTGTCGCTGATGAAAGTTCTGCGACGGCATCTTGAATTCCTCTCGTCAGAGGGTTCAGAGCACGCTTTGAAATGCCTGAGGGGCAATGACTGGAGCTTACTTGATCCACTGACTTGGCCAGCCTTTGTAATTCAATATTTGGTAGTCAGTGAATGCACATATACTCAGGAGTGGAGCAGCTTTTATGAAGAAATTTCTGCTGGTGAATATTACCTATTGCCAGTAAGTAGGAAGTTGATGATATTACAACTTCTCTGTGATAGTGTTTTGGAATCTGAGGATATAATAGCAGAAATGAACATGAGGAGAGATTCAGAAGTTGGGGTGGATTATGATGGAGAAGATGCCCTTCCTTCAGAAGGTCCAAAGTTTGTGTCACCTTCAAATGCTGTGAACCAACCTGGAAGCTCTATGTCTCAATCCAGAGATCCAGAAAGCACTGAAGATGGCGATGTCGATAGAAATGGAGATGAATGTCGCCTTTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCTTCTGCTTATCATTCTAGGTGTATTGGGGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCTGAGTGCAAAATTAATATAACAGGGCCAACCATTACAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAGGGATTTGTATGGGCAACTCTTTGTGGGTACATGTGATCACTTACTTGTGCTGAATATTGGCAGTGATGAATTTCATATGAGATATTACAATCAGAATGACATTCCCAAGGTTCTCTTAGTGCTTTATGAATCCATGCAGCATAGACCAATATACCATGATATTTGCATGGCAGTGCTAGAACATTGGAGTGTTCCAAAAAGTTTCTTGTTTCATTCTGTTTCAACGGGAGCTAACGTGAACTCACCAAATATAAAGGAAGAGACTAAGCCCTCTACTTTATTACTTCCTCCTTTGGACGAAGGCAACCATACACCTGCTAGTTTGGGGCCATCTCTTGATGTTTCATCAGTTACCCCTCTATGTCATATTCCTCAGTGCAATGGCAATGCTAGCACTAATGAGTGCTCTGCTGTGACTACTAAGCTTCCCGAGGACACTTGGATGGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTCTCAGTTAGTCATCAGTCCAACATGGATTATCAAAATTTTGTTGATAGACCAACAGCAGTAGATCTTGCCAAGTGCTCTTTGCTAAATGGTCAATTAAGTAATTATGACCATGCCAGTGATACAGGGTTGCCTATAACTCTTTCTTCGCAAACCAAAGAAAGCACCCAAGTAGGTTTTGAAAAGTGTGAACGCAATGTAACCAGCGATTTTGCTTACATGGGTTTCTCCTATAAGCCTTCTTCATATGTTAATCACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTACCCTTCTTTCCTTAGAGGAATCTAGGTTAGAGGGGCATGTGTCAGACAATCAGAGGAAAACTTTATCAGGAAACACGTACTTGCAAGCCAAAGCATTCTCACTAACAGCTTCACGTTTTTTTTGGCCCAGTTCTGAAAAGAAACCTGTGGAGGTTCCAAGAGAAAGATGTGGCTGGTGCTTTTCTTGTAAAGCGCCTGCTTCAAGCAAGAGAGGATGCATGTTAAACCATGCCGCTCTAGGTGCTACAAAAAGTGCTATAAAAATACTTTCTGGTTTTTCTCCTGTAAGAAGTGGAGAGGGTATTCTCCCTAGTATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGTTTACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATGTTCGACAGTTCAAATTGCCACATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCGGCTGTTGATGAAGCTACAGCTGATGGTTGTCCTGAAAACTCTATGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTTTTGCCAAAATCCATGGTCAGAAAAGCAGCACGTCAAGGTGGTTCAAGAAAAATTTCAGGCATATTTTATGCTGATGGCTTTGAAATCCCTAAAAGAAGCAGACGGCTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCTTCGCAGCTGGCACTTCAGGTCAGATATCTTGATTTTTATCTCCGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGTGTTTAGAAATGCAAATATTTGTGATAATAAACTTGTAGAAGGGAAAACTTATTATGGAATAGCTTTTGGGAGTCAAAAACATCTTCCTTCTCGAGTGATGAAAAATGTTTTTGAAATGGAGCAAGGTCCCGACGGAAAGGAAAAGTATTGGTTTTCTGAAACACGCATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGAAAACATGCCATCATGTAATGAGGAGCACTCTAATACTGCCTATGAGTTGCTGCACAGAAGGCAGTTGAAGGCTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGGGATAACTTGGACGTGATGCCATGTTCTGTATGTCAGATGGGTGTTTTAATTCGGGATGCTCACAAGTGTAATTTGTGCCAAGGTTATTGTCATGAGGGCTGTTCCACAAGATCAACAGTCTCTGCAAATGAAGTTGAGCACTTGACCACATGCAAGCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAGAATAGTAATGACTCGCCAACCAGTCCATTAATCCTACAAGGACGAGAAAATAGATCTGGGACATTTTTGAAGGGCTCAAGGCTGAAATCTGATCAAATACCAAAATCTTCCAAGATAAAGGCTAATAATCCTGACATGAAACAAGTTACTTCTGTGATGTCTCTGAAAGGAACAAAGGCAAAATATTATGAACAAGAACCAACTTCTACTAGGTCAAAGGATAATCATTTTGACATGCAACAAGTTGCTTCTGAGACAACTACGGCAGGGAAACGCCCTCGCAAAAATTCTTCTTGGGGCATTATATGGAAAAAGAAAATGAAGGAAGATAACAATGATTTCAGGCTCAAAAACATACTTTTAAGAGGGGGTTCAAACAAGCCACAATTAAAACCTGTTTGTCACTTGTGTCGTAAGCCATATATGTCTGATCTGATGTATATATGCTGCGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAGCTTGAAGAATCCAAAATTTCTAGTGTGCTGGGCTTCAAATGTTGCAAGTGTCGAAGGATCAAATCACCAGTTTGTCCTTACTTTGATTTGAAGTCTAAGAGACAAGAGAGCAAGAAGTCACGCATAACGGTAACGAAGAAAGAGTATTCTGGAGCAGATTCCGATTCTGGAGCAATCTATGATATGAGAGAGTGTGAAGCTGCTACTCCTATCTTTTCCATTGAGGATGATCCTACTTCTGTCTTTCCTGCAGAGGATGATCCTCTTCTTTTCTCTCTTTCAAGCGTTGAGCTGATAACAGAACCTACGGTAGATGGAGATGTTGAGTGGAACAGTATCTCTGGGCCGGGGCTTCAGAAACTGCCTGTGAGAAGGAATGTTAAGCCTGAGGGGGATGGTGATATTTCTTTTGGAGGTATTCCTTTTCAAGGTGAATTCTCAACCTACGATGAGGCAAGTAATCTGTCCAAGCCTGCAGAGGTATCTTCGCCTTTAGAATATGCCTCTTCTGTTGACTTTGACAACAAGCTGCTGAATGACCCTGATAATGTAAATTATGACGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTGACGGAACTGCTGCAGCCAGATGACGGTAGTCAGGTTGAGGAAGTTGATGTGTCTGGGGACTTGTCGGGATATTTGGAATGTGGAGATCTTAAGTCAGAACCTACATTTTCCATGCAAGATACCGGCTATTGCTGTATGCAATGTTCACAAGTGGAACCAGTCCCTGATCTCTGTTGTGAGATTTGTGGGATTTTGATTCACAGCCATTGTTCACCGTGGGTTGAATTACCATCTAGGCTGGGAAATTGGAGGTGTGGAAATTGCCGGGAATGGTAATAGCTGGTGTTGAAAGTCCTTGAGAAGTAAGTTTTTAATATTCAATCATGGGCAAATTGAGTCGATGAATGTAACGTTTTTTGTAGCAATTAGCTCTGCGACCTAGGGAGCAAACGATGAAGGTGTGTTTTTCAACCAGCAGTCGATGGTTTTGGTTTTCGTTGATGCTCTGTCTGGAATCTGGGATATCGGCTGATTTTTGTTCCCTAGTTAGTGGAATTGTTCCCTAGTTAGTCTAGAAATTTGCTCTCTCAGATAAGCAATATTTTTTGTACAATGCTTCTCTGATGCATTATTTGTATAGATTAAAAATTAAAATTCACATTTTTTTGAGTTCGGTCAAAATGAAGAAGCTGCACTCAATTTAA 5641 0.4226 MEAPQKRSRGRPRKHRRNEAESENEVKGQAVGTQAIALVGKYVLKNFPGNGVFLGKVVYYECGLYRVNYEDGDFEDLDSAEVRAILVKDDGFDANLSRRRGLLDKLVSKGSRKVKDVSEKGPAEPTKEDDSLRELDAGSVLQKHDDEGDDDDDPDEDCSSDSGTSSGGRDDAETLPPPPPPPPEFPPSSGTIGVPEQCVSHLLSVYGFLRSFSIRLFLLPFTLDEFIGAINCRVPNSLFDAIHVSLMKVLRRHLEFLSSEGSEHALKCLRGNDWSLLDPLTWPAFVIQYLVVSECTYTQEWSSFYEEISAGEYYLLPVSRKLMILQLLCDSVLESEDIIAEMNMRRDSEVGVDYDGEDALPSEGPKFVSPSNAVNQPGSSMSQSRDPESTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINITGPTITKGTSLRGAEIFGRDLYGQLFVGTCDHLLVLNIGSDEFHMRYYNQNDIPKVLLVLYESMQHRPIYHDICMAVLEHWSVPKSFLFHSVSTGANVNSPNIKEETKPSTLLLPPLDEGNHTPASLGPSLDVSSVTPLCHIPQCNGNASTNECSAVTTKLPEDTWMESILSADSASVSVSHQSNMDYQNFVDRPTAVDLAKCSLLNGQLSNYDHASDTGLPITLSSQTKESTQVGFEKCERNVTSDFAYMGFSYKPSSYVNHYMHGDFAASAAAKFTLLSLEESRLEGHVSDNQRKTLSGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCFSCKAPASSKRGCMLNHAALGATKSAIKILSGFSPVRSGEGILPSIATYIIYMEECLRGLLEENIRTIAFCGDWVKLMDDWLVECSTVQIATSTLGTAQKRAPSGRRYKKRSAVDEATADGCPENSMWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGIFYADGFEIPKRSRRLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASVFRNANICDNKLVEGKTYYGIAFGSQKHLPSRVMKNVFEMEQGPDGKEKYWFSETRIPLYLVKEYEEGNENMPSCNEEHSNTAYELLHRRQLKAICKDIFFYLTCKRDNLDVMPCSVCQMGVLIRDAHKCNLCQGYCHEGCSTRSTVSANEVEHLTTCKQCYHARLLAQKENSNDSPTSPLILQGRENRSGTFLKGSRLKSDQIPKSSKIKANNPDMKQVTSVMSLKGTKAKYYEQEPTSTRSKDNHFDMQQVASETTTAGKRPRKNSSWGIIWKKKMKEDNNDFRLKNILLRGGSNKPQLKPVCHLCRKPYMSDLMYICCETCQNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPYFDLKSKRQESKKSRITVTKKEYSGADSDSGAIYDMRECEAATPIFSIEDDPTSVFPAEDDPLLFSLSSVELITEPTVDGDVEWNSISGPGLQKLPVRRNVKPEGDGDISFGGIPFQGEFSTYDEASNLSKPAEVSSPLEYASSVDFDNKLLNDPDNVNYDDYMDFEPHTYFSVTELLQPDDGSQVEEVDVSGDLSGYLECGDLKSEPTFSMQDTGYCCMQCSQVEPVPDLCCEICGILIHSHCSPWVELPSRLGNWRCGNCREW 1637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02790 1637 Pfam PHD-finger 402 444 IPR019787 -
Pste1g02790 1637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1310 1370 IPR013083 -
Pste1g02790 1637 MobiDBLite consensus disorder prediction 1 27 - -
Pste1g02790 1637 ProSiteProfiles DDT domain profile. 196 256 IPR018501 -
Pste1g02790 1637 MobiDBLite consensus disorder prediction 111 145 - -
Pste1g02790 1637 CDD PHD2_CHD_II 402 443 - -
Pste1g02790 1637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Pste1g02790 1637 MobiDBLite consensus disorder prediction 173 189 - -
Pste1g02790 1637 SMART testlast3 196 256 IPR018501 -
Pste1g02790 1637 MobiDBLite consensus disorder prediction 111 191 - -
Pste1g02790 1637 CDD Tudor_AtPTM-like 39 86 IPR047365 -
Pste1g02790 1637 ProSitePatterns Zinc finger PHD-type signature. 402 443 IPR019786 -
Pste1g02790 1637 PANTHER PHD FINGER FAMILY PROTEIN 35 1497 - -
Pste1g02790 1637 MobiDBLite consensus disorder prediction 361 397 - -
Pste1g02790 1637 SUPERFAMILY FYVE/PHD zinc finger 1315 1370 IPR011011 -
Pste1g02790 1637 SMART PHD_3 401 444 IPR001965 -
Pste1g02790 1637 SMART PHD_3 1316 1364 IPR001965 -
Pste1g02790 1637 SMART PHD_3 1126 1174 IPR001965 -
Pste1g02790 1637 SMART PHD_3 1590 1635 IPR001965 -
Pste1g02790 1637 MobiDBLite consensus disorder prediction 368 386 - -
Pste1g02790 1637 SUPERFAMILY FYVE/PHD zinc finger 372 445 IPR011011 -
Pste1g02790 1637 Pfam DDT domain 197 253 IPR018501 -
Pste1g02790 1637 ProSiteProfiles Zinc finger PHD-type profile. 399 446 IPR019787 -
Pste1g02790 1637 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 299 343 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02790 Pste-Chr1 11568061 11582275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02790 301 531 EF-hand Containing Proteins AT5G22760 50.000 2.04e-63 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pste1g02790 DDT 5.8e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03104 3 23815566 23824121 Pste1g02790 1 11568061 11582275 PCT