LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02773	ATTTGACTTAGAGAGAGGAGAGGTGGTGGAAGTTCCCATTTTAAGCAGAGAAGTGTCCCTGGATCAGTTGGGTTTGATTTGCCGGTAAAGTTCGAAAACCCTAACTGCTGATGGAGAGGAGTGATGGTTACAGTTCGGAGGAGGAATGCATGGAGGATTATAGGCGTGGAGGCTACCATGCCGTTCTCCTTGGCGACACTTTCCACAATGCCCGTTACGTCGTCCAATCCAAACTCGGTTGGGGCCACTTCTCCACCGTCTGGCTCGCTTGGGACACTCTCTATTCGCGTTATGTGGCCCTTAAAATTCAGAAGAGTGCGCAGCATTACACTGAAGCTGCAATGGATGAAATAAAAATTCTCAAACAAATAGCTGAGGGGGATCTGGACGACAAGAAGTGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCAGGGCCTAATGGACAGCATGTGTGTTTGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATCAAATATAGTGACTATCGCGGGGTTCCTCTTCCCATGGTGAAAGAGATCTGTTTTCATATTTTGGTGGGGTTGGATTACTTACATCGTGAGCTTTCTGTCATTCACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAAATTCATCTAAAGATCCGAGGAAATCAGGCGCTCCACTCATCCTTCCAAACAGCAAGGATAAGGTTACATCCAATAATGGGACTAACCAAGACACTAAAATTTTGAATGGTGATCTGATGAAGAACCAGAAAAAGAGAATGCAGAGGAAGGCTAAGGTTGCTCAAGGCTGTGTTGAGAAGGAAACTTCAGAGGAAGCTAAGGATTGTAAAGGACTTGAGCAAGAAGATTGCCGCAATGATGTGAGATCGAATGTGGAATCTGTTGAAGATAAACCAGATAGTTCTTTCAGTAAAGGTGCATCTACAAAGACTTCTGAAAAGGATGTTTCACAAGGAAGTCATAATCAAACGACAGGCAACCGATCCATGAGAAAGAAGTTGCTGGAAGCTGTTGACCTTAAGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTCACAAACAATTCACAAATGATATTCAGACAAGGCAATACAGGTGTCCTGAGGTTCTTCTTGGATCCAAGTACTCAACTCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTACGATAGAGATGAGGATGAGATAGAAGCTTTAGTTTCCGGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGTCTCCGAAGGTATGAATGTTATCTGCTCTCTTGCACTAGGTGGTCGCTATTCCCGAGAATTTTTCAATAGACATGGTGACTTGAGGCACGTCGACAATTTGCGATTCTGGCCAATGGATAAGGTGCTGATGGAGAAGTATAATTTCAGTGAGCAAGACACAAAAGACCTGGTTGACTTCCTTGTTCCAATACTTGATTTTGTTCCTGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGATGAGTGCAGGCCCCCGGACTCTTGAGCCCTCAATAACTACCGCACAACCTGATGCCATTAATGAAGAATTATCTGAAAGGAAGAAGAGGGAAACGGCAGTGGAAATTGGTTTGAGGAATGTCACCATTAAGGGAATTTATGAGCCTCTGAAAGACTCCCAACCTCTAAAGTCATCCAAATAGATACTTGACCGGGTAAGCATATGCAACCTGTTTTCTTTTTGGGGGCAACTCTTCCTTGGAGCTTGATATCTATGGAATTGTTTGCGTGAGGCATTATATATACAATGCACGCCAGACTAGACAAGTTTGTGACTAGCGAAGCATTTCCTGGGTCAAAGACAGGCGCTTTATCTTTGCTGTATTATTGTAACCTTCTTTCACCATTACTGGTATTACAGGTGTAGCTTCAAATTCAATTGATCAAGTGTGCTAAGTTATATAAACTATGGTTTTTTTGGTGCTAGGAAATTCTTCCTACACTAAATAATATTCACCGGAAGTATTCCAAAAGGAGAGGAGAAAGGGGTATTTTAGAAGATAAAATCGATTAGAAAACAATTTTTCATAGAGAAGGTGCATGTATTTTAATCGCAACTCAATCATTGATTCTTTAATCCATGGTTGTAATTATACTTACT	2215	0.4226	MERSDGYSSEEECMEDYRRGGYHAVLLGDTFHNARYVVQSKLGWGHFSTVWLAWDTLYSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCLVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLINSSKDPRKSGAPLILPNSKDKVTSNNGTNQDTKILNGDLMKNQKKRMQRKAKVAQGCVEKETSEEAKDCKGLEQEDCRNDVRSNVESVEDKPDSSFSKGASTKTSEKDVSQGSHNQTTGNRSMRKKLLEAVDLKCKLVDFGSACWTHKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDEIEALVSGSSGIDDGASWDDVSEGMNVICSLALGGRYSREFFNRHGDLRHVDNLRFWPMDKVLMEKYNFSEQDTKDLVDFLVPILDFVPEKRPTAAQCLSHPWMSAGPRTLEPSITTAQPDAINEELSERKKRETAVEIGLRNVTIKGIYEPLKDSQPLKSSK	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02773	548	MobiDBLite	consensus disorder prediction	260	302	-	-
	Pste1g02773	548	CDD	STKc_SRPK	25	489	-	-
	Pste1g02773	548	Pfam	Protein kinase domain	311	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02773	548	Pfam	Protein kinase domain	36	175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02773	548	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	163	175	IPR008271	GO:0004672\|GO:0006468
	Pste1g02773	548	ProSitePatterns	Protein kinases ATP-binding region signature.	42	65	IPR017441	GO:0005524
	Pste1g02773	548	ProSiteProfiles	Protein kinase domain profile.	36	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02773	548	FunFam	CMGC/SRPK protein kinase	22	121	-	-
	Pste1g02773	548	SUPERFAMILY	Protein kinase-like (PK-like)	31	499	IPR011009	-
	Pste1g02773	548	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	8	509	-	-
	Pste1g02773	548	FunFam	Serine/threonine-protein kinase SRPK-like protein	304	489	-	-
	Pste1g02773	548	SMART	serkin_6	36	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02773	548	Gene3D	Transferase(Phosphotransferase) domain 1	308	489	-	-
	Pste1g02773	548	MobiDBLite	consensus disorder prediction	197	216	-	-
	Pste1g02773	548	MobiDBLite	consensus disorder prediction	273	302	-	-
	Pste1g02773	548	MobiDBLite	consensus disorder prediction	184	225	-	-
	Pste1g02773	548	Gene3D	Transferase(Phosphotransferase) domain 1	90	178	-	-
	Pste1g02773	548	Gene3D	Phosphorylase Kinase; domain 1	22	121	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02773	Pste-Chr1	11484892	11488329	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02773	7	533	EF-hand Containing Proteins	AT5G22840	60.374	0.0	633

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Pste1g02773		Pkinase	3e-20	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03111	3	23914553	23920558	Pste1g02773	1	11484892	11488329	PCT