LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02759	CCATTTCCCCTCCAGCACACTATTTTTTCCCGGTCCTTTCTTCTTCCCCAACTTCTCCAAACTCCACCCTCATCCATTTTCGTTTTTCCTCTTCTACCCCTCCATTTCTTCACTTTCTCCACTGCAGGCATTACTCTCGCAATCTAACGCCGTCGTTTCGTTGTTTTCTTTTTTTTTTTTGTAAATTATTTCTGGTGACTGAGTTCTCTGCTTAGGGTTTGAAATGGAGGCGAAGAACAAAGAGAAAAACGAGGATCCTGCCGTGGAGTCTCCAACTTCGGTCCTTGAAGACGAAGATGTCTGTGCCACGAAAGAGGAAGTTAAGTTGGAGGAAGAGATGATTGCCGATGGGTCCTCTTTTATATCGAAAACTATGGTGGAGGAAGAAGAGAAATTACTTGAAGCCAGGATAAAGGAAGAGGAGGAGCAGTGTGAGGTAGCACCTGACCTCAACGACACACAGTTTAGCAAATTGGATGAGCTTTTGACTCAAACCAAACTGTATTCTGAGTTTCTGCTGGAGAAAATGGATGACATCACACTTGCTGTTGGTGAGCAAGAGAATGGGGAAGAGCAAGAGACCGAACCTTCTGCAAAGAAAAAGGGCCGTGGATCAAAAAGAAAAGCTGCTTCCCAGTACAATACTAGGAAGGCCAAAAGGGCAGTTGCTGCTATGCTGACAAGATCTAAAGAAAGTGAGAAGACAGAAGATACTAACATGACTGAGGATGAAAAAGTTCAAAATGAGCAAAACGAGCTCATGCCTTTACTGACAGGGTGTAAAGTGGTTGATTTCCTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGATTCCTATCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCGCCTTTATCAACCCTCTCAAACTGGGTGAATGAAATTTCAAGGTTTGCTCCATCACTCCTTGCCATTATCTACCACGGTGACAAGAAACAGAGAGAAGAGATTCGAAGGAAACACATGCCTGCTAGAACAATTGGTCCTAAATTTCCCATAGTCATAACTTCTTATGAGATTGCTCTAAATGATGCTAAGAAATATTTACGGTCATACAATTGGAAATATCTTGTTGTTGACGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAACACATTGAAATGGATAAATAATAACTTGGCAGAACTATGGTCTCTGTTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGGAAGTGCAATAACACAGCAACCAAGGAAGAACAGGAAGAGAAACGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCCATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCACGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAACATCAGAAGAATTTGAGAGATCAACTAGTTGATAAGACCTTGGGGAACTATTTAAAAGAAAATATGTCAAGTGGTCGTCTTCCAGCACGAGCTTTGTTTCGCAATTTGGTTATGCAACTTAGGAAGGTGTGTAACCATCCTGATCTCATAGAATCAGCGTTTGATGATTCCATTGTGTATCCTCCTTTAAATGAGATAGTTGAAAACTGTGGAAAATTCCATTTGCTTGATCGATTGCTGGAACGTTTATTAGCAAGGAACCACAAAGTTCTTATCTTCAGTCAGATGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGCACCTGGATGAGAGGAAACGACAGATCCAGGAATTCAATGATGCAAATAGCAATTGCAGAGTCTTTCTTCTTTCTACCAGGGCCGGTGGATTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGATGTCATAGAATAGGTCAAACAAAACCTGTTCATGTTTACAGACTCTCAACTGCTCAATCTATTGAGTGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTTGTGATTGAGAAGGGACAGTTTCATCAAGAACGTTTAAAAGCTGCCAATATGGATGAAATGCTGCAGGAACAGGATGTTTTGGCTTTGCTTCGGGACGAAGAAACTGTGGAAGATAAAATGGTCCAAACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGTAGTGATCTTGTTGTCAATAACTCAGACGGTGATAACTTGAAAGCTCCAGTCAGTGTTTTTCCTCTTAAAGGTCCAGGGTGGGAGGTAGTGATTCCAACTGCCAGCGGGGCATGCTTTCTACTCTCAACAGCTAGTTTCTCATCACAATGTATGGCCGCAGAGTTTGAAAAGCTTGTTTTTTGTGGTATGAGATAGAATGGCTTTTTGAGACGGTCTCATATGTCACGGTGGTAATGGCCTGGGGGCATTCATTTTTGTAAGATACTTAAAACAACTTTATGTTTAGAGATGAATCTATTCTGTGGTCAAGTTTTTTGCGTCAACTTGTTCAGTGGTGGAAGTGATTATTTTAGGTTTGTCTAACGAAATGAATTGCTTTGGATAGGATGCTTAGGTTGTCTAATGATGATAGAGTTTAGTTTAAAAATTGGGAGATGCAGCGTCGTTGTAAAGGGTTGTAACGACCGATCATCATCTTTTATTTATGAAAAATTTTGTTGA	2803	0.406	MEAKNKEKNEDPAVESPTSVLEDEDVCATKEEVKLEEEMIADGSSFISKTMVEEEEKLLEARIKEEEEQCEVAPDLNDTQFSKLDELLTQTKLYSEFLLEKMDDITLAVGEQENGEEQETEPSAKKKGRGSKRKAASQYNTRKAKRAVAAMLTRSKESEKTEDTNMTEDEKVQNEQNELMPLLTGCKVVDFLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLLAIIYHGDKKQREEIRRKHMPARTIGPKFPIVITSYEIALNDAKKYLRSYNWKYLVVDEGHRLKNSKCKLVNTLKWINNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNTATKEEQEEKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLRDQLVDKTLGNYLKENMSSGRLPARALFRNLVMQLRKVCNHPDLIESAFDDSIVYPPLNEIVENCGKFHLLDRLLERLLARNHKVLIFSQMTKVLDIMDYYFSEKGFEVCRIDGSVHLDERKRQIQEFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIECRMLKRAFSKLKLEHVVIEKGQFHQERLKAANMDEMLQEQDVLALLRDEETVEDKMVQTDISDEDLEKLLDRSDLVVNNSDGDNLKAPVSVFPLKGPGWEVVIPTASGACFLLSTASFSSQCMAAEFEKLVFCGMR	757

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02759	757	FunFam	lymphoid-specific helicase isoform X1	154	420	-	-
	Pste1g02759	757	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	398	689	IPR027417	-
	Pste1g02759	757	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	190	346	IPR014001	-
	Pste1g02759	757	CDD	SF2_C_SNF	480	614	-	-
	Pste1g02759	757	SMART	helicmild6	520	604	IPR001650	-
	Pste1g02759	757	Pfam	SNF2-related domain	146	469	IPR000330	GO:0005524\|GO:0140658
	Pste1g02759	757	PANTHER	SNF2/RAD54 HELICASE FAMILY	33	677	-	-
	Pste1g02759	757	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	494	650	IPR001650	-
	Pste1g02759	757	MobiDBLite	consensus disorder prediction	150	174	-	-
	Pste1g02759	757	FunFam	Chromatin complex subunit A 106	406	635	-	-
	Pste1g02759	757	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	396	IPR027417	-
	Pste1g02759	757	MobiDBLite	consensus disorder prediction	111	174	-	-
	Pste1g02759	757	Gene3D	-	402	705	IPR027417	-
	Pste1g02759	757	Coils	Coil	49	71	-	-
	Pste1g02759	757	Pfam	Helicase conserved C-terminal domain	495	604	IPR001650	-
	Pste1g02759	757	SMART	ultradead3	175	357	IPR014001	-
	Pste1g02759	757	MobiDBLite	consensus disorder prediction	1	25	-	-
	Pste1g02759	757	Gene3D	-	183	397	IPR038718	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02759	Pste-Chr1	11354932	11361492	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02759	194	625	RAD5 or RAD16-like Gene Family	AT3G16600	23.583	8.41e-24	105

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Pste1g02759		SNF2_N	1e-52	CL0023