Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02747 ATGAACATTCTAATTTCCTTTTCCGGAGTCGAAATGTCGAACTCCGGCGTGGTGCACCGAATGGCTTTGTTTCCCAGAGGATTCTGTTTCCTTGATGGGGCTATTGCTGGTGATTATATTGGCAAAGAGAGTAATGAGATGGCTATTGCTGGTCTACACAGTGTGTCCGTGCTTGACTCTTCTTTCCTGAGGGACTCCCATTCCCAGTCGTCTGGGAGAGGGGGGGAGGGAAGACGGGGAAGTACCCGGTCGTCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAACCAAGTTCGAAGAAGACCTGGTGAAGTACCTCTTGAACAAAGGAGGGATGGGTTGATTGCGGACCTTTCACAGGAAGATAGACTGGATATCCAAGAGGGAAGGCAGCAACATGTTTTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCTCAGTCACAAAGTCAGAATGAATCCCATGATGATCATGAGGATTTAAACAATTCTAGCTGTGAGAATTCTTCTGACTTGGGAGAAATTGAAAGGGAAAGAGTAAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCAGGTACCAAACATTTCTGAAAGAAATAACGGTTCAAGAGGAGAATGGCTTGGGGAAACCGAGCAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTCTTTCTTCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGATACACAGATTGAGCGAGTGCGTAATGGACTCGTTGCTAACCAGATTGGGGGTCAAACAGAGCATACACGGAGGGGCATTCGTAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGTGAAAGGCAAAGAGAAATTCAGGAATTGTTAGACCATCGGGCTGTATCGCAATTCCCGTATCGGAATCGCATTCAGGCACTTCTTAGAGGCAGATTCTTAAGAAATGATAGACCTGTTGACAATAAGAGGCCCGTTTCTGTTGCAGAAAGTGAATTGGGCTTCCTGAGGCGAAGACAGACTGTATCAGGTCTAAGGGAGGGATTTTTCTCTAGAAAGGAGAATAGTGGCTGCAGTCAAGCAGCCGGCAATGTATCTGATACCTCATCCTATGTTGATATTGATTTTAATACAAATGAACAGATGGGACCAAGCTGTTCGCATATGGTCCCAATTGTACATTCTGAACAGTCTGACCCTAAAGGCAGAGGAAACAATGGAATTGAGGTATCAGCCAACCAGAACTGTGCACAAGGTTCCATGTGTCAAAATTTAAATTGGCAAGAATCTACTGCTGAAGTAGGTGAACACTTGCAGCATTTGCCCATTGAATCACTAGATTGTCAATCATCATTCAGTATTGATGTTGAAAGAGGGGACAACACTGAGCTAAATGTTGATGTGATGCCCATTGAAGATGCTGCTAACGAAATTCCCCAACAAAGCTTGCGAATTGAAGAGGCAGAGCATGGTAATAACCAGGACTTCAGTGAGGGGCATTTTGAGCTATCCGAGCTGGGTGGTATAAATAATAGTGAAAACAATCATTCAAATTACAGCATCCCCATGGAAGATAATGTTGATGATGTAAATTGGAATGAATCTGGTGCTCTAGAAGGAGTACAACAAGAAGAAAATTTTGAAAACGAAGGAAGTGAGTGGTATCAGAGTAATACCGAATGGAGAAATAGTACTGAGGGTAATGTGGATGATAATCAGCTCACTAATACAGCAAATGAGTGGCCTGAAAACAGTTTGGGAAATGATGGAGAAAACTCTCGCGTGCAAGAATCTCATGAAGTGTGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCTGATCATGACAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTTAGGGAACTTCTTAACAGGAGAAGTGTCTCTAACCTCCTACGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAAGTCATGCTAACATTGACTGGGAGTTGCAAGAAACAGCCCCTTCTTCTGCCTCGGTAGAGCAGGACCTTGAGCAGCAGAATAGGGATCAAATTGATGGTCAGGAGGAAGGTGTTGTTAATACTCCACTTAACCTACCTTCTTTACCTATACCGCCTCCTCTGCCCATTTGGGAACAGCATAACCATCGGGACAACTGGTCACAGAATGACATAAATAACCAACGTCTAGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCACGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCATGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAACCGCTCTGCTGGTGCATCAGGAATACCTGACTGTGAGTCACCAGAAGATAGATCCAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGCCAAAGCAATATCGATTCCTTGTTGTACAGATGTGGCCATTTGTGTACATGTTCCAAATGTGCCAATGAGTTGCTCCAAAGCAGAAAGAAGTGCCCGATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAATTTGACATTAATATAAAGGTCACACTTTTAACAAAATACAGGATTCTAACAAGTTTTATCACCTGGACGTTTCCAGGTACCTTTTTTCTTTTTAAATTTTTTTGTTTGTTACTGTGATTACTGTATTTATGTCGAGTGCACTGGAATACAACATGATGGCATTTTTTTTGGGGCCATGATTCTCATGAATAAAAATTGTATGTCTTTTTTGAAGTTTCGCGTTGCACTTTTTGTGGTTTTGGGTAGAGATTTCATCATTTTAATT 2983 0.4274 MNILISFSGVEMSNSGVVHRMALFPRGFCFLDGAIAGDYIGKESNEMAIAGLHSVSVLDSSFLRDSHSQSSGRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVRRRPGEVPLEQRRDGLIADLSQEDRLDIQEGRQQHVLEDAVLGENESETWSQSQSQNESHDDHEDLNNSSCENSSDLGEIERERVRQIFREWMNSGARDQVPNISERNNGSRGEWLGETEQERVRIIREWVQMSSQQRSLSSGENREEPSAEIDTQIERVRNGLVANQIGGQTEHTRRGIRKLCGRQAMLDMLKKAESERQREIQELLDHRAVSQFPYRNRIQALLRGRFLRNDRPVDNKRPVSVAESELGFLRRRQTVSGLREGFFSRKENSGCSQAAGNVSDTSSYVDIDFNTNEQMGPSCSHMVPIVHSEQSDPKGRGNNGIEVSANQNCAQGSMCQNLNWQESTAEVGEHLQHLPIESLDCQSSFSIDVERGDNTELNVDVMPIEDAANEIPQQSLRIEEAEHGNNQDFSEGHFELSELGGINNSENNHSNYSIPMEDNVDDVNWNESGALEGVQQEENFENEGSEWYQSNTEWRNSTEGNVDDNQLTNTANEWPENSLGNDGENSRVQESHEVWQEDGGFQEAVENWLGGPSDHDSAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQSHANIDWELQETAPSSASVEQDLEQQNRDQIDGQEEGVVNTPLNLPSLPIPPPLPIWEQHNHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGASGIPDCESPEDRSKWECVRKGLCCICCQSNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02747 905 ProSiteProfiles Zinc finger RING-type profile. 853 892 IPR001841 -
Pste1g02747 905 MobiDBLite consensus disorder prediction 239 262 - -
Pste1g02747 905 MobiDBLite consensus disorder prediction 146 181 - -
Pste1g02747 905 Coils Coil 289 316 - -
Pste1g02747 905 Pfam Zinc finger, C3HC4 type (RING finger) 850 897 - -
Pste1g02747 905 MobiDBLite consensus disorder prediction 582 612 - -
Pste1g02747 905 MobiDBLite consensus disorder prediction 65 85 - -
Pste1g02747 905 SUPERFAMILY RING/U-box 852 898 - -
Pste1g02747 905 Coils Coil 781 808 - -
Pste1g02747 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 838 903 IPR013083 -
Pste1g02747 905 CDD mRING-HC-C3HC5_NEU1 853 902 - -
Pste1g02747 905 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 507 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02747 Pste-Chr1 11290739 11295796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02747 853 899 C3H Transcription Factor Family AT3G06140 42.553 1.53e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02747 1 11290739 11295796 Pste1g02747 1 11290739 11295796 ECH
Pste3g03115 3 23986328 23991591 Pste1g02747 1 11290739 11295796 PCT