Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02739 AACACTTGCAAGGTTGGAAACGCAAGGAAGATTTTGGGTGGCAGAGCACTTGGGCGTAGCTGTTATAAGACGGCTTCAAACTCCTTTGTTGCCATTCAACAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGATTCCAATTCTAGCCAGAAGAACATAGCGAAGGGGAAACGCACGAAAAGGATGAGGCTTTTGTACCCATCGGGGGTGGCTGCGGCCATAAGCACAAGCACTTCAAGCGGGGGTTCATCGACAACCACCTATGAGAGCGAAGAGGAAGACATGGCGAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTGATCCCCATCAAGACATGGCAAATTGTGTGAAGGCAGAAAAGGGAACAGCCAAGCTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACAGAACGTTTCCTTCCTTTCAAGCACTGGGGGGACACAGGGCGAGTCACAAGAAGCCAAAAGTAGCAGTAGCAGTAGCAGTAGCGGTAGCGGCTGAAGAGAAAAAAGGAGCAGCATCTCACAGCAACTACGATGGGTTTGAGGAGGGTAACGTTAAAAGTGGTCCGGTTCATTTGGGTAAGATTCACGAGTGTTCCATTTGTGGCTCCGAATTCACATCTGGACAAGCATTGGGTGGACACATGAGAAGGCATAGGGCATCCGCAAACACCAACACTGTTGAACCCACCACCGCTCCACCAAGGAATATCTTGCAATTCGATCTTAACCTCCCCGCCCCCGAAGACGATCTCCGGGACCCCACCGCTAAGTTTCAATTTCCACCACCACCACCGACTCAGGTGCCGGCTTTGGTAGATTGTCATTAT 849 0.4971 NTCKVGNARKILGGRALGRSCYKTASNSFVAIQQMEMEMEMEMEMEMDSNSSQKNIAKGKRTKRMRLLYPSGVAAAISTSTSSGGSSTTTYESEEEDMANCLILLAQGGESDPHQDMANCVKAEKGTAKLGFYIYECKTCNRTFPSFQALGGHRASHKKPKVAVAVAVAVAAEEKKGAASHSNYDGFEEGNVKSGPVHLGKIHECSICGSEFTSGQALGGHMRRHRASANTNTVEPTTAPPRNILQFDLNLPAPEDDLRDPTAKFQFPPPPPTQVPALVDCHY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02739 283 Gene3D Classic Zinc Finger 133 225 - -
Pste1g02739 283 Pfam C2H2-type zinc finger 203 227 - -
Pste1g02739 283 Pfam C2H2-type zinc finger 135 160 - -
Pste1g02739 283 SMART c2h2final6 135 157 IPR013087 -
Pste1g02739 283 SMART c2h2final6 203 225 IPR013087 -
Pste1g02739 283 PANTHER ZINC FINGER PROTEIN ZAT5 66 268 - -
Pste1g02739 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Pste1g02739 283 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Pste1g02739 283 SUPERFAMILY beta-beta-alpha zinc fingers 134 225 IPR036236 -
Pste1g02739 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 230 IPR013087 -
Pste1g02739 283 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02739 Pste-Chr1 11190548 11191472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02739 51 283 C2H2 Transcription Factor Family AT2G28200 42.958 1.31e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g02739 zf-C2H2_6 1.9e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02177 4 15810768 15811589 Pste1g02739 1 11190548 11191472 ECH
Pste1g02739 1 11190548 11191472 Pste1g02739 1 11190548 11191472 ECH