Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02728 GTTAATGCTCCGCCCCTGCTTCTCTCTTTCTCTTGACATATATCGTTCTGCAACAACTAGGGTTTCCTCTTTCCTTTCTTACCCCTCCTTCGTCCCTCTCCGCGCCATGTCGAAGCCTCCCTCCGCATTCGACGCCCTCATGTCCGGCGCCCGCGCCGCCGCCAAGAAAAGACCACCTCAATCCCCCAAGAAACGGAAAACCCCACCCTCCACCTCCACCTCCACCTCCACCTCAAAACCTAGCACCCCTTTCCAACCCCAAACCGTTAAACCCATTCAGACGGAACCGCCGCGGAAGGAGGTCCGCCACGTGTTATCTGCCTCGCAGGAAAAAACCGGCGAGCTGAAAAAGCTAGTTCCGCAGCTTAAGAAGAAACCATCGGATTTCGATCCCTCTTCGGTGGTTGCATGGGAGAAGGGCAAACCTGTCCCCTTCCTCTTTCTCTGCTTGGCCTTCGACATGATTTCTCAAGAATCCGGAAGAATTGTCATCACTGACATTGTTTGCAATCTTCTGAGGACTGTCATCTACTCCACCCCCGATGATCTTGTTCTCGTTGTCTACCTCTCCGCTAACCGGATTGCACCATCGCACCAAGGCTTGGAAATGGGAGTTGGCGATGCTTCCATTTCCAAAGCACTTGCCGAGGCCTATGGAAGGACCGAGCCATGGATTAAGACTCAGTATCAGAAAAGAGGGGATTTGGGCTTGGTTGCCAAAGAGAGTCGTTCCTCGCAGTCTATGATGTGGAAGCCTGATGCATTGACTATTAGAAAGGTTTTCAACACTTTTCACCTTATTGCTAAGGAAACTGGAAAAGAAAGTCAAGAGAAGAAAAAAAATCATATCAAGGCACTTCTTGTTGCGGCAACTGACTGTGAACCTCAATATCTGATCCGGTTGCTACAGTCGAAGTTGCGAATTGGCTATGCTGAGAAAACCCTCTTAGCTGCATTAGGTCGAGCTGCAGTATACACTGAAGAACACTCTAAACCACCTCCTGGTATTCAGTCTCCTTTAGAAGAGGCTTCGGAGATTATTAAACGAGTCTATTCGGTGCTTCCTGACTATGACAAAATAATATCTACACTTCTGACGGAGGGTCTATGGATGCTTCCAAAGAAATGTAATTTTACTCCTGGCATTCCAGTTGGAGCTATGTTGTCAAAGGCAACAAAGGGTGTGTTTGAAGTTTATAATAAATTCCAGAATGTGGAATTTGCCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGCTCAGTTGAGGTTTACAGTAGAAATGCAGAACGGAGCACTGAGAAGTTTCCTGATGTTGTTGCTACAGTTTCAAGACTAAAGAAAGCAACAGTATCGTCATTTGTTCTTGATTGTGAAATTGTTGCATATGATCGTAAAACACAGAAGATCTCATCTTTCCAGATGCTTAGTACTCGGGCACGCAAGAAAGTAGAACTGGCAGATATAAAGGTTAATGTTTGCGTATATGCTTTTGATTTGTTGTATCTTAATGGTCAAGCACTTCTTCAGGAAAATCTGAGAGTCCGTAGAGAGCATCTCTATGCTTCTTTTGAGGAAGAATCTGGATTTTTTCAGTTTGCAACATCAATAACATCAAATGATGTTGAGGAAATACAGAGATTTCTTGACCAAGCTGTCGGTGCAAGTTGTGAGGGATTGATTATTAAAACATTAAACGAGGATGCTACATATGAACCTGCCAAGAGATCACGCAACTGGCTAAAACTAAAGAAAGATTATATGGAGAATATAGGGGACTCATTAGATTTGGTACCTATTGCTGCTTTCCATGGACGTGGGAAGCGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAATGATAATGAAGAGTTTCAAAGTATTTGCAAGATTGCAACGGGATTCACTGAAGATATGCTTGAACAGTGTTCTTCTAGTCTTAGTTCTAAAGTGATTCCCAAGCCAAAGCCATATTATAGATTTGGAGAAACAATCAATCCTGACGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTAAAAGCTGCAGACCTGACCATTAGCCCCGTTCACCGAGCTGCAGTGGGCATAGTAGATCCGGACAAGGGCATATCTCTTCGATTTCCACGAATACTTCGAGTCCGGCCTGACAAAGCTCCTGAACAGGCCACATCATCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAGCACGATCACACAAACAACCAAGATGACGATGAAGATGAAGATGATGATTGAGTGAAATTTGTTGGTTGTTTCATGCTGATCTATAAAATCTTGGTTATTTTTGCCGATGATCCCGTAAGAGTAGATGTGTAGATGTGTAGATGCGAATTCTTTACCTTCAAGCATATCAGAGAGCATAATTGCTCTTTCAATATGATTGTGAATTCGATGATCAACGTGGAAGAGTTCATGAAGGGTCCAAAAAGTATACATTTGCGCTCAAACCATTTTAATTAGATAATTTTCCAAAAGGGACCCTGTGCACTTAATTCATGTGTAGAATTGTTTTTTTTTCTTCTTTGTAACATGATACTGTAGTGGATTCAATATTAGTCCACGTGTCAAATGATTTAGCATTGATGTCGGTTTTCAGTATTAAAATTGTTGGATTGAACTTTCGATCTATAACCGTAGATGTCGCTGTTTCAAATATCTAGTTCTAATTCCATGGA 2727 0.4312 MLRPCFSLSLDIYRSATTRVSSFLSYPSFVPLRAMSKPPSAFDALMSGARAAAKKRPPQSPKKRKTPPSTSTSTSTSKPSTPFQPQTVKPIQTEPPRKEVRHVLSASQEKTGELKKLVPQLKKKPSDFDPSSVVAWEKGKPVPFLFLCLAFDMISQESGRIVITDIVCNLLRTVIYSTPDDLVLVVYLSANRIAPSHQGLEMGVGDASISKALAEAYGRTEPWIKTQYQKRGDLGLVAKESRSSQSMMWKPDALTIRKVFNTFHLIAKETGKESQEKKKNHIKALLVAATDCEPQYLIRLLQSKLRIGYAEKTLLAALGRAAVYTEEHSKPPPGIQSPLEEASEIIKRVYSVLPDYDKIISTLLTEGLWMLPKKCNFTPGIPVGAMLSKATKGVFEVYNKFQNVEFACEYKYDGERAQIHYMENGSVEVYSRNAERSTEKFPDVVATVSRLKKATVSSFVLDCEIVAYDRKTQKISSFQMLSTRARKKVELADIKVNVCVYAFDLLYLNGQALLQENLRVRREHLYASFEEESGFFQFATSITSNDVEEIQRFLDQAVGASCEGLIIKTLNEDATYEPAKRSRNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIATGFTEDMLEQCSSSLSSKVIPKPKPYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDPDKGISLRFPRILRVRPDKAPEQATSSEQVAEMYNAQKHDHTNNQDDDEDEDDD 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02728 760 NCBIfam ATP-dependent DNA ligase 202 740 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pste1g02728 760 Gene3D - 396 593 - -
Pste1g02728 760 MobiDBLite consensus disorder prediction 723 760 - -
Pste1g02728 760 CDD Adenylation_DNA_ligase_I_Euk 374 592 - -
Pste1g02728 760 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 409 417 IPR016059 GO:0003909
Pste1g02728 760 Pfam DNA ligase N terminus 143 318 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste1g02728 760 MobiDBLite consensus disorder prediction 49 111 - -
Pste1g02728 760 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 125 376 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste1g02728 760 FunFam DNA ligase 594 753 - -
Pste1g02728 760 Gene3D - 594 757 IPR012340 -
Pste1g02728 760 ProSiteProfiles ATP-dependent DNA ligase family profile. 491 627 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste1g02728 760 Gene3D - 118 387 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste1g02728 760 Pfam ATP dependent DNA ligase C terminal region 614 725 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pste1g02728 760 MobiDBLite consensus disorder prediction 728 744 - -
Pste1g02728 760 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 55 758 - -
Pste1g02728 760 MobiDBLite consensus disorder prediction 65 91 - -
Pste1g02728 760 Gene3D DNA ligase/mRNA capping enzyme 414 539 - -
Pste1g02728 760 ProSitePatterns ATP-dependent DNA ligase signature 2. 563 589 IPR016059 GO:0003909
Pste1g02728 760 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 377 595 - -
Pste1g02728 760 MobiDBLite consensus disorder prediction 94 111 - -
Pste1g02728 760 Pfam ATP dependent DNA ligase domain 386 589 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste1g02728 760 FunFam DNA ligase 120 387 - -
Pste1g02728 760 SUPERFAMILY Nucleic acid-binding proteins 597 743 IPR012340 -
Pste1g02728 760 CDD OBF_DNA_ligase_I 597 742 - -
Pste1g02728 760 FunFam DNA ligase 414 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02728 Pste-Chr1 11099792 11106769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02728 33 754 Core DNA Replication Machinery Family AT1G08130 64.832 0.0 1009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02728 1 11099792 11106769 Pste1g02728 1 11099792 11106769 ECH