Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02701 GTAGGAAGGATATAAGAATAAGAAGACACGACCCTCTCTACATTCTCATTCTCTGCGTTTTGGCTTTGATCTTTGATTGCACCAATGTCTCACAAACCTGATAGTACTTCCGACTCAAAATCTGGGAAGAAGGACTTTTCCACCGCGATTCTGGAACGAAAGAAATCGCCCAACCGATTAGTGGTCGACGAGGCCGTTAACGATGATAACTCTGTGCTTACCATGCATCCTCAAACCATGGAAAAGCTCCAACTTTTCCGGGGCGACACTGTCCTCGTCAAGGGGAAGAAACGGAGGGATACGGTTTGCATAGCCCTTGCGGACGAGAATTGTGAGGAGCCGAAGATAAGAATGAACAAAGTTGTGAGGTCCAATTTGAGGGTTCGTCTTGGGGATGTTGTGTCTGTGCATCCCTGCCCTGATGTCAAGTATGGCAAGCGCGTCCACATTCTTCCCATTGATGACACTATCGAAGGTGTCTCTGGCAATCTCTTTGATGCTTACTTGAAACCATATTTCTTGGAGGCTTATCGTCCTGTCAAAAAGGGGGATCTATTTCTTATCCGAGGAGGGATGAGAAGTATAGAGTTCAAGGTTATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACAGAAATATTCTGTGAGGGGGAGCCTGTTAAAAGAGAGGATGAAGAAAGGCTGGATGATGTTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTGAGACATCCACAACTTTTTAAATCAATCGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCACCAGGCTCTGGTAAGACGTTAATAGCTAGAGCTGTTGCTAATGAAACTGGAGCATTCTTCTTTTGTATTAATGGCCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCTCCCTCTATCATCTTTATTGATGAGATAGATTCTATTGCACCCAAGCGGGAGAAGACACACGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACACTTATGGATGGATTGAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACAAATCGACCAAATAGCATTGACCCTGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGAGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTTTCAGATGATGTTGATTTGGAGAGAATTTCAAAAGATACTCATGGATATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGCATCAGGGAGAAGATGGATGTCATTGATCTGGAAGATGAGAGTATAGATGTGGAAGTACTGAATTCTATGGCAGTTTCAAATGAGCATTTCCATACTGCGCTAGGAACAAGCAATCCATCTGCTTTACGAGAAACTGTTGTTGAAGTGCCTAATGTCAGCTGGGATGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCAGTGGAGCACCCAGAAAAATTTGAAAAGTTTGGTATGTCCCCATCAAAAGGAGTTCTCTTCTATGGTCCACCAGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTAGAGAGATTTTTGACAAGGCCAGGCAATCAGCTCCATGCGTCCTCTTCTTTGATGAGCTTGATTCCATTGCTACTCAGAGAGGGAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCTAAAAAGACCGTGTTTATAATTGGGGCCACTAACAGACCTGACATCATTGACCCTGCACTTCTTCGGCCTGGTCGTCTGGATCAACTGATCTATATTCCTCTCCCTGATGAGGAGTCCCGTCATCAAATCTTCAAGGCCTGCATGAGGAAGTCACCTGTCTCAAAAGATGTTAATTTGAGAGCACTAGCTGAGTTCACTCAAGGTTTTAGTGGTGCTGACATAACAGAGATATGCCAGCGAGCGTGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCGTGAGAGGAGGAGAAGTGAAAACCCCGAGGCCATGGATGAAGACATCGACGAAGATGTTTCAGAAATCAAGGCATCTCATTTTGAAGAGTCAATGAAGTATGCACGCAGGAGTGTTAGTGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAACAATCCCGGGGATTTGGAAGTGATTTTACGTTTCGAGAAACTGGTGGTAGAGCTGCTGGATCTGACACCTTTGCAACTTCGGCTGGTGGAGCTGATGAAGATGATCTGTATAGTTAGGTTTTATTTATTTGAAGTTACATACCTAGCTCAAATGACAATAGTAGACTGCCCCCCTCAAAGGGTTAACTTAGCCTTTTTCAGATCTTACTTTTCGTATATTCAAAATATTAACCAACTTTAGTACCGGCTTATGATGGAAAAAATTCTGGTTATGCCAGAAAATAATTGAGCATTTTATTCTAAGATTGCTGCATTATCCTGTATTTCAGTTCTGTAGTTGGTATTAGTATAACGTTTACAA 2749 0.4318 MSHKPDSTSDSKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVLTMHPQTMEKLQLFRGDTVLVKGKKRRDTVCIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHPCPDVKYGKRVHILPIDDTIEGVSGNLFDAYLKPYFLEAYRPVKKGDLFLIRGGMRSIEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDVEVLNSMAVSNEHFHTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQIFKACMRKSPVSKDVNLRALAEFTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMDEDIDEDVSEIKASHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSDFTFRETGGRAAGSDTFATSAGGADEDDLYS 806
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02701 806 Gene3D - 377 468 - -
Pste1g02701 806 FunFam Transitional endoplasmic reticulum ATPase 469 652 - -
Pste1g02701 806 Pfam ATPase family associated with various cellular activities (AAA) 519 652 IPR003959 GO:0005524|GO:0016887
Pste1g02701 806 Pfam ATPase family associated with various cellular activities (AAA) 246 375 IPR003959 GO:0005524|GO:0016887
Pste1g02701 806 Gene3D - 469 652 IPR027417 -
Pste1g02701 806 FunFam Transitional endoplasmic reticulum ATPase 207 375 - -
Pste1g02701 806 FunFam Cell division control 48 114 210 - -
Pste1g02701 806 CDD RecA-like_CDC48_r1-like 210 375 - -
Pste1g02701 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 467 IPR027417 -
Pste1g02701 806 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Pste1g02701 806 SMART CDC48_N_2 31 114 IPR003338 -
Pste1g02701 806 SMART AAA_5 515 654 IPR003593 GO:0016887
Pste1g02701 806 SMART AAA_5 242 378 IPR003593 GO:0016887
Pste1g02701 806 SUPERFAMILY Cdc48 domain 2-like 113 205 IPR029067 -
Pste1g02701 806 Gene3D - 211 375 IPR027417 -
Pste1g02701 806 MobiDBLite consensus disorder prediction 1 23 - -
Pste1g02701 806 Gene3D - 656 764 - -
Pste1g02701 806 FunFam Cell division control 48 377 468 - -
Pste1g02701 806 Gene3D - 114 210 - -
Pste1g02701 806 SUPERFAMILY ADC-like 27 111 IPR009010 -
Pste1g02701 806 Gene3D - 8 113 - -
Pste1g02701 806 CDD RecA-like_CDC48_r2-like 490 650 - -
Pste1g02701 806 SMART CDC48_2_2 131 197 IPR004201 -
Pste1g02701 806 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Pste1g02701 806 PANTHER AAA-FAMILY ATPASE 404 770 - -
Pste1g02701 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 765 IPR027417 -
Pste1g02701 806 NCBIfam CDC48 family AAA ATPase 32 768 IPR005938 GO:0016787
Pste1g02701 806 FunFam Transitional endoplasmic reticulum ATPase 8 113 - -
Pste1g02701 806 Pfam Cell division protein 48 (CDC48), domain 2 133 196 IPR004201 -
Pste1g02701 806 Pfam AAA+ lid domain 398 440 IPR041569 -
Pste1g02701 806 Pfam AAA+ lid domain 674 714 IPR041569 -
Pste1g02701 806 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 112 IPR003338 -
Pste1g02701 806 MobiDBLite consensus disorder prediction 774 806 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste1g02701 Pste-Chr1 10808933 10813665 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02701 448 711 Calmodulin-binding Proteins AT3G56690 47.727 9.47e-80 275